Figure 2From: Optimizing substitution matrix choice and gap parameters for sequence alignmentMatrix accuracy. Optimal accuracy (Q) according to POP for the VTML, VT, BLOSUM, JTT and PAM series using the g2 model on the Bali (upper) and Prefab (lower) training sets. The horizontal axis is the evolutionary distance of a matrix; the correspondence between PAM and BLOSUM distance is arbitrary.Back to article page