From: Optimizing substitution matrix choice and gap parameters for sequence alignment
Set | Model | g | e | G | E | Q |
---|---|---|---|---|---|---|
Bali | g2 | 5.370 | 0.423 | Â | Â | 80.7% |
Bali | g4 | 5.874 | 0.473 | 2.332 | 1.488 | 81.0% |
Prefab | g2 | 6.914 | 0.320 | Â | Â | 61.2% |
Prefab | g4 | 6.742 | 0.476 | 3.964 | 0.322 | 62.3% |
TermGaps | g2 | 6.508 | 0.133 | Â | Â | 80.8% |
TermGaps | g4 | 5.010 | 0.635 | 15.507 | 0.026 | 84.2% |
IntGaps | g2 | 5.725 | 0.304 | Â | Â | 78.3% |
IntGaps | g4 | 5.725 | 0.304 | 6.419 | 3.343 | 78.4% |