Table 4 Typical compute resources required by POP.
From: Optimizing substitution matrix choice and gap parameters for sequence alignment
Set | Model | Time (mins.) | Memory (Mb) |
|---|---|---|---|
Bali | g2 | 135 | 72 |
Bali | g4 | 840 | 72 |
Prefab | g2 | 27 | 24 |
Prefab | g4 | 68 | 24 |
TermGaps | g2 | 55 | 26 |
TermGaps | g4 | 192 | 27 |
IntGaps | g2 | 13 | 12 |
IntGaps | g4 | 61 | 25 |