Figure 1

Screenshot from Bioclipse 2. Screenshot from Bioclipse 2 showing the new Molecules Table (top middle panel) with chemical structures and properties in a spreadsheet-like editor and the selected structure rendered in a separate 2D view (bottom right panel), and computed properties (bottom left panel). Also shown is a 3D structure where monomers are selected in the outline (top rightmost panel) and highlighted in the interactive 3D visualization component Jmol (top right panel). The Javascript console (bottom middle panel) can be used to execute scripting commands.