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Figure 1 | BMC Bioinformatics

Figure 1

From: Uncovering transcriptional interactions via an adaptive fuzzy logic approach

Figure 1

Conceptual diagram of the AdaFuzzy algorithm. First, consensus sequence motifs of a given TF are identified using a robust PWM (rPWM), which the rPWM is then used to search for potential TF binding sites in the upstream sequence of a given target gene via a vector of three features. Then this feature vector is incorporated to predict potential TIs by an adaptive fuzzy system (ANFIS), and a classifier is developed to infer the interaction types (AT or RT). Finally, all inferred TIs are categorized into one or more of the four major types of promoter architectures.

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