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Table 5 Experimental results of the GENIA subcategory annotations plus AIMed and GENETAG, respectively

From: Investigating heterogeneous protein annotations toward cross-corpora utilization

No. Data Criterion Precision Recall F-score
1 AIMed+ molecule+ subunit Exact 81.69 66.67 73.42
   Partial 91.39 74.58 82.14
  AIMed+ molecule+ subunit+ complex Exact 77.78 66.16 71.50
   Partial 91.14 77.52 83.78
  AIMed+ molecule+ subunit+ complex+ domain Exact 76.45 67.18 71.52
   Partial 89.39 78.54 83.62
2 GENETAG+ molecule+ family Exact 71.08 55.03 62.03
   Partial 87.40 67.66 76.27
  GENETAG+ molecule+ family+ subunit+ complex+ domain Exact 69.90 58.28 63.56
   Partial 85.30 71.11 77.56
3 AIMed+ DNA Exact 75.69 41.76 53.83
   Partial 87.96 48.53 62.55
  AIMed+ filtered DNA Exact 80.48 42.66 55.76
   Partial 92.29 48.91 63.94
4 GENETAG+ DNA Exact 69.82 36.44 47.89
   Partial 83.97 43.82 57.59
  GENETAG+ filtered DNA Exact 76.57 35.18 48.21
   Partial 92.70 42.60 58.38
5 AIMed+ molecule+ subunit+ complex+ filtered DNA Exact 77.49 67.69 72.26
   Partial 91.37 79.82 85.21
  AIMed+ molecule+ subunit+ complex+ domain+ filtered DNA Exact 75.78 68.33 71.86
   Partial 89.09 80.33 84.49
  GENETAG+ molecule+ family+ subunit+ complex+ domain+ filtered DNA Exact 70.97 66.14 68.47
   Partial 85.14 79.34 82.14
  GENETAG+ molecule+ family+ subunit+ complex+ domain+ filtered DNA+ RNA Exact 71.34 67.02 69.11
   Partial 84.82 79.68 82.17
6 pure AIMed Exact 80.44 75.10 77.68
   Partial 88.24 82.38 85.20
  AIMed + GENIA Protein Exact 65.06 67.31 66.16
   Partial 78.89 81.61 80.23
7 pure GENETAG Exact 71.38 68.00 69.65
   Partial 86.21 82.12 84.11
  GENETAG + GENIA Protein Exact 69.75 58.48 63.62
   Partial 84.77 71.08 77.33
  1. Here, DNA represents the GENIA DNA_domain_or_region and RNA represents the GENIA RNA_molecule.