TY - JOUR AU - Russell, R. B. AU - Alber, F. AU - Aloy, P. AU - Davis, F. P. AU - Korkin, D. AU - Pichaud, M. AU - Topf, M. AU - Sali, A. PY - 2004 DA - 2004// TI - A structural perspective on protein-protein interactions JO - Curr Opin Struct Biol VL - 14 UR - https://doi.org/10.1016/j.sbi.2004.04.006 DO - 10.1016/j.sbi.2004.04.006 ID - Russell2004 ER - TY - JOUR AU - Aloy, P. AU - Russell, R. B. PY - 2004 DA - 2004// TI - Ten thousand interactions for the molecular biologist JO - Nat Biotechnol VL - 22 UR - https://doi.org/10.1038/nbt1018 DO - 10.1038/nbt1018 ID - Aloy2004 ER - TY - JOUR AU - Salwinski, L. AU - Eisenberg, D. PY - 2003 DA - 2003// TI - Computational methods of analysis of protein-protein interactions JO - Curr Opin Struct Biol VL - 13 UR - https://doi.org/10.1016/S0959-440X(03)00070-8 DO - 10.1016/S0959-440X(03)00070-8 ID - Salwinski2003 ER - TY - JOUR AU - Szilagyi, A. AU - Grimm, V. AU - Arakaki, A. K. AU - Skolnick, J. PY - 2005 DA - 2005// TI - Prediction of physical protein-protein interactions JO - Phys Biol VL - 2 UR - https://doi.org/10.1088/1478-3975/2/2/S01 DO - 10.1088/1478-3975/2/2/S01 ID - Szilagyi2005 ER - TY - JOUR AU - Ritchie, D. W. PY - 2008 DA - 2008// TI - Recent progress and future directions in protein-protein docking JO - Curr Protein Pept Sci VL - 9 UR - https://doi.org/10.2174/138920308783565741 DO - 10.2174/138920308783565741 ID - Ritchie2008 ER - TY - JOUR AU - Halperin, I. AU - Ma, B. AU - Wolfson, H. AU - Nussinov, R. PY - 2002 DA - 2002// TI - Principles of docking: An overview of search algorithms and a guide to scoring functions JO - Proteins VL - 47 UR - https://doi.org/10.1002/prot.10115 DO - 10.1002/prot.10115 ID - Halperin2002 ER - TY - JOUR AU - Tovchigrechko, A. AU - Wells, C. A. AU - Vakser, I. A. PY - 2002 DA - 2002// TI - Docking of protein models JO - Protein Sci VL - 11 UR - https://doi.org/10.1110/ps.4730102 DO - 10.1110/ps.4730102 ID - Tovchigrechko2002 ER - TY - JOUR AU - Chen, R. AU - Li, L. AU - Weng, Z. PY - 2003 DA - 2003// TI - ZDOCK: an initial-stage protein-docking algorithm JO - Proteins VL - 52 UR - https://doi.org/10.1002/prot.10389 DO - 10.1002/prot.10389 ID - Chen2003 ER - TY - JOUR AU - Fischer, D. AU - Lin, S. L. AU - Wolfson, H. L. AU - Nussinov, R. PY - 1995 DA - 1995// TI - A geometry-based suite of molecular docking processes JO - J Mol Biol VL - 248 ID - Fischer1995 ER - TY - JOUR AU - Wolfson, H. AU - Rigoutsos, I. PY - 1997 DA - 1997// TI - Geometric hashing: an overview JO - IEEE Computational Science Engineering VL - 4 UR - https://doi.org/10.1109/99.641604 DO - 10.1109/99.641604 ID - Wolfson1997 ER - TY - JOUR AU - Ritchie, D. W. AU - Kemp, G. J. PY - 2000 DA - 2000// TI - Protein docking using spherical polar Fourier correlations JO - Proteins VL - 39 UR - https://doi.org/3.0.CO;2-6 DO - 3.0.CO;2-6 ID - Ritchie2000 ER - TY - JOUR AU - Lensink, M. F. AU - Mendez, R. AU - Wodak, S. J. PY - 2007 DA - 2007// TI - Docking and scoring protein complexes: CAPRI JO - Proteins VL - 69 UR - https://doi.org/10.1002/prot.21804 DO - 10.1002/prot.21804 ID - Lensink2007 ER - TY - JOUR AU - Bonvin, A. M. PY - 2006 DA - 2006// TI - Flexible protein-protein docking JO - Curr Opin Struct Biol VL - 16 UR - https://doi.org/10.1016/j.sbi.2006.02.002 DO - 10.1016/j.sbi.2006.02.002 ID - Bonvin2006 ER - TY - JOUR AU - Andrusier, N. AU - Mashiach, E. AU - Nussinov, R. AU - Wolfson, H. J. PY - 2008 DA - 2008// TI - Principles of flexible protein-protein docking JO - Proteins VL - 73 UR - https://doi.org/10.1002/prot.22170 DO - 10.1002/prot.22170 ID - Andrusier2008 ER - TY - JOUR AU - Krol, M. AU - Chaleil, R. A. AU - Tournier, A. L. AU - Bates, P. A. PY - 2007 DA - 2007// TI - Implicit flexibility in protein docking: cross-docking and local refinement JO - Proteins VL - 69 UR - https://doi.org/10.1002/prot.21698 DO - 10.1002/prot.21698 ID - Krol2007 ER - TY - JOUR AU - Kihara, D. AU - Lu, H. AU - Kolinski, A. AU - Skolnick, J. PY - 2001 DA - 2001// TI - TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.181328398 DO - 10.1073/pnas.181328398 ID - Kihara2001 ER - TY - JOUR AU - Lee, S. Y. AU - Skolnick, J. PY - 2008 DA - 2008// TI - Benchmarking of TASSER_2.0: an improved protein structure prediction algorithm with more accurate predicted contact restraints JO - Biophys J VL - 95 UR - https://doi.org/10.1529/biophysj.108.129759 DO - 10.1529/biophysj.108.129759 ID - Lee2008 ER - TY - JOUR AU - Misura, K. M. AU - Baker, D. PY - 2005 DA - 2005// TI - Progress and challenges in high-resolution refinement of protein structure models JO - Proteins VL - 59 UR - https://doi.org/10.1002/prot.20376 DO - 10.1002/prot.20376 ID - Misura2005 ER - TY - JOUR AU - Katchalski-Katzir, E. AU - Shariv, I. AU - Eisenstein, M. AU - Friesem, A. A. AU - Aflalo, C. AU - Vakser, I. A. PY - 1992 DA - 1992// TI - Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.6.2195 DO - 10.1073/pnas.89.6.2195 ID - Katchalski-Katzir1992 ER - TY - JOUR AU - Gabb, H. A. AU - Jackson, R. M. AU - Sternberg, M. J. PY - 1997 DA - 1997// TI - Modelling protein docking using shape complementarity, electrostatics and biochemical information JO - J Mol Biol VL - 272 UR - https://doi.org/10.1006/jmbi.1997.1203 DO - 10.1006/jmbi.1997.1203 ID - Gabb1997 ER - TY - JOUR AU - Mintseris, J. AU - Wiehe, K. AU - Pierce, B. AU - Anderson, R. AU - Chen, R. AU - Janin, J. AU - Weng, Z. PY - 2005 DA - 2005// TI - Protein-Protein Docking Benchmark 2.0: an update JO - Proteins VL - 60 UR - https://doi.org/10.1002/prot.20560 DO - 10.1002/prot.20560 ID - Mintseris2005 ER - TY - JOUR AU - Jiang, F. AU - Kim, S. H. PY - 1991 DA - 1991// TI - "Soft docking": matching of molecular surface cubes JO - J Mol Biol VL - 219 UR - https://doi.org/10.1016/0022-2836(91)90859-5 DO - 10.1016/0022-2836(91)90859-5 ID - Jiang1991 ER - TY - JOUR AU - Palma, P. N. AU - Krippahl, L. AU - Wampler, J. E. AU - Moura, J. J. PY - 2000 DA - 2000// TI - BiGGER: a new (soft) docking algorithm for predicting protein interactions JO - Proteins VL - 39 UR - https://doi.org/3.0.CO;2-Q DO - 3.0.CO;2-Q ID - Palma2000 ER - TY - JOUR AU - Zacharias, M. PY - 2005 DA - 2005// TI - ATTRACT: protein-protein docking in CAPRI using a reduced protein model JO - Proteins VL - 60 UR - https://doi.org/10.1002/prot.20566 DO - 10.1002/prot.20566 ID - Zacharias2005 ER - TY - CHAP AU - Sael, L. AU - Kihara, D. ED - Chen, J. ED - Lonardi, S. PY - 2009 DA - 2009// TI - Protein surface representation and comparison: New approaches in structural proteomics BT - Biological Data Mining PB - Hall/CRC Press CY - Boca Raton, Florida, USA ID - Sael2009 ER - TY - JOUR AU - Li, B. AU - Turuvekere, S. AU - Agrawal, M. AU - La, D. AU - Ramani, K. AU - Kihara, D. PY - 2007 DA - 2007// TI - Characterization of local geometry of protein surfaces with the visibility criterion JO - Proteins VL - 71 UR - https://doi.org/10.1002/prot.21732 DO - 10.1002/prot.21732 ID - Li2007 ER - TY - JOUR AU - Tseng, Y. Y. AU - Dundas, J. AU - Liang, J. PY - 2009 DA - 2009// TI - Predicting Protein Function and Binding Profile via Matching of Local Evolutionary and Geometric Surface Patterns JO - J Mol Biol VL - 387 UR - https://doi.org/10.1016/j.jmb.2008.12.072 DO - 10.1016/j.jmb.2008.12.072 ID - Tseng2009 ER - TY - JOUR AU - Laskowski, R. A. AU - Watson, J. D. AU - Thornton, J. M. PY - 2005 DA - 2005// TI - ProFunc: a server for predicting protein function from 3D structure JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki414 DO - 10.1093/nar/gki414 ID - Laskowski2005 ER - TY - JOUR AU - Kahraman, A. AU - Morris, R. J. AU - Laskowski, R. A. AU - Thornton, J. M. PY - 2007 DA - 2007// TI - Shape variation in protein binding pockets and their ligands JO - J Mol Biol VL - 368 UR - https://doi.org/10.1016/j.jmb.2007.01.086 DO - 10.1016/j.jmb.2007.01.086 ID - Kahraman2007 ER - TY - JOUR AU - Kihara, D. AU - Sael, L. AU - Chikhi, R. PY - 2009 DA - 2009// TI - Local surface shape-based protein function prediction using Zernike descriptors JO - Biophys J VL - 96 UR - https://doi.org/10.1016/j.bpj.2008.12.3435 DO - 10.1016/j.bpj.2008.12.3435 ID - Kihara2009 ER - TY - JOUR AU - Sael, L. AU - Li, B. AU - La, D. AU - Fang, Y. AU - Ramani, K. AU - Rustamov, R. AU - Kihara, D. PY - 2008 DA - 2008// TI - Fast protein tertiary structure retrieval based on global surface shape similarity JO - Proteins VL - 72 UR - https://doi.org/10.1002/prot.22030 DO - 10.1002/prot.22030 ID - Sael2008 ER - TY - JOUR AU - Sael, L. AU - La, D. AU - Li, B. AU - Rustamov, R. AU - Kihara, D. PY - 2008 DA - 2008// TI - Rapid comparison of properties on protein surface JO - Proteins VL - 73 UR - https://doi.org/10.1002/prot.22141 DO - 10.1002/prot.22141 ID - Sael2008 ER - TY - JOUR AU - Shentu, Z. AU - Al, H. M. AU - Bystroff, C. AU - Zaki, M. J. PY - 2008 DA - 2008// TI - Context shapes: Efficient complementary shape matching for protein-protein docking JO - Proteins VL - 70 UR - https://doi.org/10.1002/prot.21600 DO - 10.1002/prot.21600 ID - Shentu2008 ER - TY - JOUR AU - Bernauer, J. AU - Aze, J. AU - Janin, J. AU - Poupon, A. PY - 2007 DA - 2007// TI - A new protein-protein docking scoring function based on interface residue properties JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btl654 DO - 10.1093/bioinformatics/btl654 ID - Bernauer2007 ER - TY - JOUR AU - Grunberg, R. AU - Leckner, J. AU - Nilges, M. PY - 2004 DA - 2004// TI - Complementarity of structure ensembles in protein-protein binding JO - Structure VL - 12 UR - https://doi.org/10.1016/j.str.2004.09.014 DO - 10.1016/j.str.2004.09.014 ID - Grunberg2004 ER - TY - JOUR AU - Segal, D. AU - Eisenstein, M. PY - 2005 DA - 2005// TI - The effect of resolution-dependent global shape modifications on rigid-body protein-protein docking JO - Proteins VL - 59 UR - https://doi.org/10.1002/prot.20432 DO - 10.1002/prot.20432 ID - Segal2005 ER - TY - JOUR AU - Zhang, Q. AU - Sanner, M. AU - Olson, A. J. PY - 2009 DA - 2009// TI - Shape complementarity of protein-protein complexes at multiple resolutions JO - Proteins VL - 75 UR - https://doi.org/10.1002/prot.22256 DO - 10.1002/prot.22256 ID - Zhang2009 ER - TY - JOUR AU - Connolly, M. L. PY - 1986 DA - 1986// TI - Shape complementarity at the hemoglobin alpha 1 beta 1 subunit interface JO - Biopolymers VL - 25 UR - https://doi.org/10.1002/bip.360250705 DO - 10.1002/bip.360250705 ID - Connolly1986 ER - TY - JOUR AU - Connolly, M. L. PY - 1992 DA - 1992// TI - Shape distributions of protein topography JO - Biopolymers VL - 32 UR - https://doi.org/10.1002/bip.360320911 DO - 10.1002/bip.360320911 ID - Connolly1992 ER - TY - JOUR AU - Hou, T. AU - Wang, J. AU - Chen, L. AU - Xu, X. PY - 1999 DA - 1999// TI - Automated docking of peptides and proteins by using a genetic algorithm combined with a tabu search JO - Protein Eng VL - 12 UR - https://doi.org/10.1093/protein/12.8.639 DO - 10.1093/protein/12.8.639 ID - Hou1999 ER - TY - JOUR AU - Gardiner, E. J. AU - Willett, P. AU - Artymiuk, P. J. PY - 2001 DA - 2001// TI - Protein docking using a genetic algorithm JO - Proteins VL - 44 UR - https://doi.org/10.1002/prot.1070 DO - 10.1002/prot.1070 ID - Gardiner2001 ER - TY - JOUR AU - Lawrence, M. C. AU - Colman, P. M. PY - 1993 DA - 1993// TI - Shape complementarity at protein/protein interfaces JO - J Mol Biol VL - 234 UR - https://doi.org/10.1006/jmbi.1993.1648 DO - 10.1006/jmbi.1993.1648 ID - Lawrence1993 ER - TY - JOUR AU - Bordner, A. J. AU - Gorin, A. A. PY - 2007 DA - 2007// TI - Protein docking using surface matching and supervised machine learning JO - Proteins VL - 68 UR - https://doi.org/10.1002/prot.21406 DO - 10.1002/prot.21406 ID - Bordner2007 ER - TY - JOUR AU - Schneidman-Duhovny, D. AU - Inbar, Y. AU - Nussinov, R. AU - Wolfson, H. J. PY - 2005 DA - 2005// TI - PatchDock and SymmDock: servers for rigid and symmetric docking JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki481 DO - 10.1093/nar/gki481 ID - Schneidman-Duhovny2005 ER - TY - JOUR AU - Lesk, V. I. AU - Sternberg, M. J. PY - 2008 DA - 2008// TI - 3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn093 DO - 10.1093/bioinformatics/btn093 ID - Lesk2008 ER - TY - JOUR AU - Jiang, F. AU - Kim, S. H. PY - 1991 DA - 1991// TI - "Soft docking": matching of molecular surface cubes JO - J Mol Biol VL - 219 UR - https://doi.org/10.1016/0022-2836(91)90859-5 DO - 10.1016/0022-2836(91)90859-5 ID - Jiang1991 ER - TY - JOUR AU - Chen, R. AU - Weng, Z. PY - 2003 DA - 2003// TI - A novel shape complementarity scoring function for protein-protein docking JO - Proteins VL - 51 UR - https://doi.org/10.1002/prot.10334 DO - 10.1002/prot.10334 ID - Chen2003 ER - TY - JOUR AU - Mak, L. AU - Grandison, S. AU - Morris, R. J. PY - 2007 DA - 2007// TI - An extension of spherical harmonics to region-based rotationally invariant descriptors for molecular shape description and comparison JO - J Mol Graph Model VL - 26 UR - https://doi.org/10.1016/j.jmgm.2007.08.009 DO - 10.1016/j.jmgm.2007.08.009 ID - Mak2007 ER - TY - JOUR AU - Gramada, A. AU - Bourne, P. E. PY - 2006 DA - 2006// TI - Multipolar representation of protein structure JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-242 DO - 10.1186/1471-2105-7-242 ID - Gramada2006 ER - TY - JOUR AU - Ritchie, D. W. AU - Kozakov, D. AU - Vajda, S. PY - 2008 DA - 2008// TI - Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn334 DO - 10.1093/bioinformatics/btn334 ID - Ritchie2008 ER - TY - BOOK AU - Edmonds, A. R. PY - 1957 DA - 1957// TI - Angular momentum in quantum mechanics PB - Princeton University Press CY - Princeton ID - Edmonds1957 ER - TY - JOUR AU - La, D. AU - Esquivel-Rodriguez, J. AU - Venkatraman, V. AU - Li, B. AU - Sael, L. AU - Ueng, S. AU - Ahrendt, S. AU - Kihara, D. PY - 2009 DA - 2009// TI - 3D-SURFER: software for high-throughput protein surface comparison and analysis JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp542 DO - 10.1093/bioinformatics/btp542 ID - La2009 ER - TY - CHAP AU - Sael, L. AU - Kihara, D. PY - 2010 DA - 2010// TI - Characterization and classification of local protein surfaces using self-organizing map BT - International Journal of Knowledge Discovery in Bioinformatics (IJKDB) ID - Sael2010 ER - TY - CHAP AU - Novotni, M. AU - Klein, R. PY - 2003 DA - 2003// TI - 3D Zernike descriptors for content based shape retrieval BT - ACM Symposium on Solid and Physical Modeling, Proceedings of the eighth ACM symposium on Solid modeling and applications UR - https://doi.org/10.1145/781606.781639 DO - 10.1145/781606.781639 ID - Novotni2003 ER - TY - JOUR AU - Chen, R. AU - Mintseris, J. AU - Janin, J. AU - Weng, Z. PY - 2003 DA - 2003// TI - A protein-protein docking benchmark JO - Proteins VL - 52 UR - https://doi.org/10.1002/prot.10390 DO - 10.1002/prot.10390 ID - Chen2003 ER - TY - JOUR AU - Schneidman-Duhovny, D. AU - Inbar, Y. AU - Polak, V. AU - Shatsky, M. AU - Halperin, I. AU - Benyamini, H. AU - Barzilai, A. AU - Dror, O. AU - Haspel, N. AU - Nussinov, R. AU - Wolfson, H. J. PY - 2003 DA - 2003// TI - Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking JO - Proteins VL - 52 UR - https://doi.org/10.1002/prot.10397 DO - 10.1002/prot.10397 ID - Schneidman-Duhovny2003 ER - TY - JOUR AU - Venkatraman, V. AU - Sael, L. AU - Kihara, D. PY - 2009 DA - 2009// TI - Potential for protein surface shape analysis using spherical harmonics and 3D Zernike descriptors JO - Cell Biochem Biophys VL - 54 UR - https://doi.org/10.1007/s12013-009-9051-x DO - 10.1007/s12013-009-9051-x ID - Venkatraman2009 ER - TY - CHAP AU - Hubbard, S. J. AU - Thornton, J. M. PY - 1993 DA - 1993// BT - NACCESS PB - University College London, Department of Biochemistry and Molecular Biology CY - London ID - Hubbard1993 ER - TY - JOUR AU - Das, R. AU - Baker, D. PY - 2008 DA - 2008// TI - Macromolecular modeling with rosetta JO - Annu Rev Biochem VL - 77 UR - https://doi.org/10.1146/annurev.biochem.77.062906.171838 DO - 10.1146/annurev.biochem.77.062906.171838 ID - Das2008 ER - TY - JOUR AU - Kolinski, A. PY - 2004 DA - 2004// TI - Protein modeling and structure prediction with a reduced representation JO - Acta Biochim Pol VL - 51 ID - Kolinski2004 ER - TY - BOOK AU - Schlick, T. PY - 2002 DA - 2002// TI - Molecular modeling and simulation PB - Springer-Verlag CY - New York UR - https://doi.org/10.1007/978-0-387-22464-0 DO - 10.1007/978-0-387-22464-0 ID - Schlick2002 ER - TY - JOUR AU - Brooks, B. R. AU - Brooks, C. L. AU - Mackerell, A. D. AU - Nilsson, L. AU - Petrella, R. J. AU - Roux, B. AU - Won, Y. AU - Archontis, G. AU - Bartels, C. AU - Boresch, S. AU - Caflisch, A. AU - Caves, L. AU - Cui, Q. AU - Dinner, A. R. AU - Feig, M. AU - Fischer, S. AU - Gao, J. AU - Hodoscek, M. AU - Im, W. AU - Kuczera, K. AU - Lazaridis, T. AU - Ma, J. AU - Ovchinnikov, V. AU - Paci, E. AU - Pastor, R. W. AU - Post, C. B. AU - Pu, J. Z. AU - Schaefer, M. AU - Tidor, B. AU - Venable, R. M. AU - Woodcock, H. L. AU - Wu, X. AU - Yang, W. AU - York, D. M. AU - Karplus, M. PY - 2009 DA - 2009// TI - CHARMM: the biomolecular simulation program JO - J Comput Chem VL - 30 UR - https://doi.org/10.1002/jcc.21287 DO - 10.1002/jcc.21287 ID - Brooks2009 ER - TY - JOUR AU - Grant, J. A. AU - Pickup, B. T. PY - 1995 DA - 1995// TI - A Gaussian Description of Molecular Shape JO - Journal of Physical Chemistry VL - 99 UR - https://doi.org/10.1021/j100011a016 DO - 10.1021/j100011a016 ID - Grant1995 ER - TY - JOUR AU - Gabdoulline, R. R. AU - Wade, R. C. PY - 1996 DA - 1996// TI - Effective charges for macromolecules in solvent JO - Journal of Physical Chemistry VL - 100 UR - https://doi.org/10.1021/jp953109f DO - 10.1021/jp953109f ID - Gabdoulline1996 ER - TY - JOUR AU - Lesk, V. I. AU - Sternberg, M. J. PY - 2008 DA - 2008// TI - 3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn093 DO - 10.1093/bioinformatics/btn093 ID - Lesk2008 ER - TY - CHAP AU - Canterakis, N. PY - 1999 DA - 1999// TI - 3D Zernike moments and Zernike affine invariants for 3D image analysis and recognition BT - Proc 11th Scandinavian Conference on Image Analysis ID - Canterakis1999 ER - TY - BOOK AU - Dym, H. AU - McKean, H. PY - 1972 DA - 1972// TI - Fourier series and integrals PB - Academic Press CY - San Diego ID - Dym1972 ER - TY - JOUR AU - Lifshits, M. AU - Blayvas, I. AU - Goldenberg, R. AU - Rivlin, E. AU - Rudzsky, M. PY - 2004 DA - 2004// TI - Rehashing for Baysian geometric hasing JO - Proceedings of the 17th International Conference on ICPR'04 VL - 3 ID - Lifshits2004 ER - TY - JOUR AU - Bebis, G. AU - Georgiopoulos, M. AU - Lobo, N. D. PY - 1998 DA - 1998// TI - Using self-organizing maps to learn geometric hash functions for model-based object recognition JO - Ieee Transactions on Neural Networks VL - 9 UR - https://doi.org/10.1109/72.668897 DO - 10.1109/72.668897 ID - Bebis1998 ER - TY - JOUR AU - Arya, S. AU - Mount, D. M. AU - Netanyahu, N. S. AU - Silverman, R. AU - Wu, A. Y. PY - 1998 DA - 1998// TI - An optimal algorithm for approximate nearest neighbor searching in fixed dimensions JO - Journal of the Acm VL - 45 UR - https://doi.org/10.1145/293347.293348 DO - 10.1145/293347.293348 ID - Arya1998 ER - TY - JOUR AU - Umeyama, S. PY - 1991 DA - 1991// TI - Least-Squares Estimation of Transformation Parameters Between 2 Point Patterns JO - Ieee Transactions on Pattern Analysis and Machine Intelligence VL - 13 UR - https://doi.org/10.1109/34.88573 DO - 10.1109/34.88573 ID - Umeyama1991 ER - TY - JOUR AU - Legrand, S. AU - Merz, K. PY - 1993 DA - 1993// TI - Rapid approximation to molecular surface area via the use of Boolean logic and look-up tables JO - J Comp Chem VL - 14 UR - https://doi.org/10.1002/jcc.540140309 DO - 10.1002/jcc.540140309 ID - Legrand1993 ER - TY - JOUR AU - Janin, J. PY - 2005 DA - 2005// TI - Assessing predictions of protein-protein interaction: the CAPRI experiment JO - Protein Sci VL - 14 UR - https://doi.org/10.1110/ps.041081905 DO - 10.1110/ps.041081905 ID - Janin2005 ER - TY - JOUR AU - Eyal, E. AU - Najmanovich, R. AU - McConkey, B. J. AU - Edelman, M. AU - Sobolev, V. PY - 2004 DA - 2004// TI - Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins JO - Journal of Computational Chemistry VL - 25 UR - https://doi.org/10.1002/jcc.10420 DO - 10.1002/jcc.10420 ID - Eyal2004 ER - TY - JOUR AU - Sebag, M. AU - Aze, J. AU - Lucas, N. PY - 2004 DA - 2004// TI - ROC-based evolutionary learning: Application to medical data mining JO - Artificial Evolution VL - 2936 UR - https://doi.org/10.1007/978-3-540-24621-3_31 DO - 10.1007/978-3-540-24621-3_31 ID - Sebag2004 ER - TY - CHAP AU - Meyer-Nieberg, S. AU - Hans-Geor, B. PY - 2007 DA - 2007// TI - Self-adaptation in evolutionary algorithms BT - Parameter Setting in Evolutionary Algorithms PB - Springer CY - Berlin/Heidelberg UR - https://doi.org/10.1007/978-3-540-69432-8_3 DO - 10.1007/978-3-540-69432-8_3 ID - Meyer-Nieberg2007 ER - TY - JOUR AU - Truchon, J. F. AU - Bayly, C. I. PY - 2007 DA - 2007// TI - Evaluating virtual screening methods: good and bad metrics for the "early recognition" problem JO - J Chem Inf Model VL - 47 UR - https://doi.org/10.1021/ci600426e DO - 10.1021/ci600426e ID - Truchon2007 ER - TY - JOUR AU - Truchon, J. F. AU - Bayly, C. I. PY - 2007 DA - 2007// TI - Evaluating virtual screening methods: good and bad metrics for the "early recognition" problem JO - J Chem Inf Model VL - 47 UR - https://doi.org/10.1021/ci600426e DO - 10.1021/ci600426e ID - Truchon2007 ER - TY - JOUR AU - Gagne, C. AU - Parizeau, M. PY - 2006 DA - 2006// TI - Genericity in evolutionary computation software tools: principles and cas-study JO - Int J Artif Intell Tools VL - 15 UR - https://doi.org/10.1142/S021821300600262X DO - 10.1142/S021821300600262X ID - Gagne2006 ER - TY - JOUR AU - Chen, R. AU - Weng, Z. PY - 2002 DA - 2002// TI - Docking unbound proteins using shape complementarity, desolvation, and electrostatics JO - Proteins VL - 47 UR - https://doi.org/10.1002/prot.10092 DO - 10.1002/prot.10092 ID - Chen2002 ER -