From: Protein-protein docking using region-based 3D Zernike descriptors
 | Original ZDOCK Rank | Context Shapes (CS) | PatchDock | ZDOCK Decoys Reranked by LZerD Score | LZerD | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Complex | Rank a) | iRMSD | HIT2K | Rank | iRMSD | RMSD | iRMSD | Rank | iRMSD | HIT2K | Rank | iRMSD | HIT2K |
1AHW | 268 | 2.28 | 21 | 402 | 2.46 | 181 | 2.49 | 15 | 1.68 | 50 | 5 | 1.34 | 42 |
1AK4 | -b) | - | - | - | - | - | - | (NA | NA | NA) | 43787 | 2.35 | 0 |
1AKJ | 4872 | 2.29 | 0 | - | - | - | - | 1985 | 1.93 | 1 | - | - | - |
1AVX | 2863 | 2.23 | 0 | - | - | - | - | 5689 | 2.22 | 0 | 786 | 2.41 | 2 |
1AY7 | 5584 | 1.33 | 0 | - | - | - | - | 394 | 1.1 | 7 | 1884 | 1.98 | 1 |
1B6C | 1717 | 2.43 | 2 | - | - | - | - | 497 | 2.13 | 8 | 1001 | 2.41 | 1 |
1BJ1 | 129 | 0.86 | 49 | 1893 | 1.93 | - | - | 306 | 1.01 | 20 | 298 | 1.86 | 7 |
1BUH | 14556 | 2.37 | 0 | - | - | - | - | 11230 | 2.42 | 0 | 12251 | 1.6 | 0 |
1BVK | 3970 | 1.94 | 0 | - | - | 2754 | 2.27 | 9560 | 2.43 | 0 | 5515 | 2.24 | 0 |
1BVN | 502 | 1.97 | 13 | 34 | 2.34 | - | - | 8 | 2.26 | 59 | 27 | 2.32 | 6 |
1CGI | 145 | 2.44 | 9 | - | - | 1120 | 2.11 | 1775 | 2.14 | 1 | 9041 | 2.1 | 0 |
1D6R | 2951 | 2.03 | 0 | - | - | - | - | 5022 | 2.49 | 0 | 2619 | 2.24 | 0 |
1DFJ | 9 | 2.27 | 40 | - | - | - | - | 9350 | 2.14 | 0 | - | - | - |
1DQJ | 2287 | 2.48 | 0 | - | - | - | - | 5391 | 2.32 | 0 | 20816 | 2.09 | 0 |
1E6E | 22643 | 2.08 | 0 | - | - | - | - | 432 | 1.94 | 2 | 52 | 2.13 | 8 |
1E6J | 15 | 1.56 | 34 | - | - | - | - | 2509 | 1.81 | 0 | 439 | 2.18 | 8 |
1E96 | 3094 | 2.26 | 0 | - | - | - | - | 882 | 1.88 | 2 | 216 | 2.14 | 2 |
1EAW | 3 | 1.54 | 62 | 94 | 2.29 | 85 | 2.29 | 5 | 1.48 | 111 | 20 | 2.42 | 10 |
1EWY | 259 | 2.32 | 2 | - | - | - | - | 1007 | 2.14 | 4 | 349 | 2.36 | 14 |
1EZU | 1100 | 1.94 | 3 | - | - | - | - | 589 | 1.42 | 4 | 824 | 1.21 | 2 |
1F34 | 5 | 2.2 | 13 | - | - | 490 | 1.81 | 5082 | 1.61 | 0 | - | - | - |
1F51 | 230 | 2.18 | 4 | - | - | - | - | 154 | 1.76 | 5 | 3545 | 1.58 | 0 |
1FQJ | 9889 | 2.29 | 0 | - | - | - | - | 628 | 2.39 | 2 | - | - | - |
1FSK | 1 | 1.63 | 105 | 20 | 1.57 | 221 | 2.39 | 29 | 1.57 | 76 | 15 | 2.4 | 11 |
1GCQ | 24339 | 2.29 | 0 | - | - | - | - | 39221 | 2.29 | 0 | 9418 | 1.8 | 0 |
1GHQ | - | - | - | - | - | - | - | (NA | NA | NA) | 15357 | 1.68 | 0 |
1GRN | 1704 | 2.34 | 2 | - | - | - | - | 1884 | 1.74 | 1 | 1407 | 2.18 | 1 |
1HE1 | 4672 | 1.31 | 0 | 1029 | 2.17 | - | - | 51 | 2 | 8 | 267 | 1.98 | 2 |
1HIA | - | - | - | - | - | - | - | (NA | NA | NA) | 44189 | 2.42 | 0 |
1I9R | 50 | 2.45 | 41 | - | - | - | - | 57 | 1.96 | 10 | 95 | 2.39 | 21 |
1IJK | 52731 | 2.44 | 0 | - | - | - | - | 39460 | 2.44 | 0 | 6731 | 2.45 | 0 |
1IQD | 612 | 2.27 | 5 | - | - | - | - | 36 | 0.99 | 27 | 41 | 1.2 | 18 |
1JPS | 171 | 1.81 | 9 | - | - | - | - | 5305 | 1.37 | 0 | 292 | 0.9 | 20 |
1K4C | 20806 | 1.53 | 0 | - | - | - | - | 4468 | 1.18 | 0 | 1188 | 1.43 | 7 |
1KAC | 2896 | 2.33 | 0 | - | - | - | - | 1313 | 2.33 | 1 | 655 | 2.18 | 3 |
1KTZ | 53599 | 1.69 | 0 | - | - | - | - | 33926 | 1.69 | 0 | 12162 | 1.19 | 0 |
1KXP | 1734 | 2.36 | 1 | - | - | - | - | 32023 | 1.91 | 0 | 14208 | 2.22 | 0 |
1KXQ | 212 | 1.91 | 13 | 2226 | 1.73 | - | - | 629 | 1.24 | 4 | 73 | 1.68 | 14 |
1MAH | 92 | 1.31 | 9 | 597 | 1.16 | 887 | 2.28 | 541 | 0.89 | 6 | 92 | 0.87 | 2 |
1ML0 | 36 | 1.56 | 21 | - | - | 231 | 2.02 | 406 | 1.37 | 6 | 559 | 2.38 | 3 |
1MLC | 110 | 1.19 | 12 | 18 | 2.28 | - | - | 243 | 1.07 | 12 | 1834 | 1.16 | 1 |
1NCA | 14 | 1.93 | 47 | - | - | - | - | 302 | 1.55 | 12 | 12528 | 1.5 | 0 |
1NSN | 185 | 1.81 | 5 | 26 | 1.79 | - | - | 147 | 1.81 | 13 | 945 | 2.29 | 1 |
1PPE | 1 | 0.57 | 218 | 2 | 2.31 | - | - | 1 | 0.72 | 194 | 1 | 0.83 | 68 |
1QA9 | 5672 | 1.88 | 0 | - | - | - | - | 5924 | 1.82 | 0 | 1381 | 2.19 | 3 |
1QFW | 257 | 1.14 | 7 | 597 | 1.73 | - | - | 136 | 2.31 | 17 | 108 | 1.24 | 4 |
1RLB | - | - | - | - | - | - | - | (NA | NA | NA) | 46073 | 1.24 | 0 |
1TMQ | 314 | 1.88 | 11 | 783 | 1.68 | 1 | 1.96 | 90 | 1.45 | 19 | 50 | 1.45 | 5 |
1UDI | 258 | 2.17 | 4 | 2649 | 2.14 | 27 | 2.42 | 219 | 2.39 | 3 | 59 | 2.36 | 6 |
1VFB | 2734 | 1.79 | 0 | 228 | 2.46 | - | - | 1534 | 1.61 | 1 | 1303 | 1.69 | 1 |
1WEJ | 465 | 2.37 | 8 | - | - | - | - | 916 | 1.97 | 1 | 3914 | 2.06 | 6 |
1WQ1 | 1101 | 2.49 | 2 | - | - | - | - | 284 | 2.05 | 2 | 141 | 1.87 | 2 |
2JEL | 45 | 1.79 | 33 | - | - | - | - | 149 | 2.44 | 19 | 133 | 2.49 | 9 |
2MTA | - | - | - | - | - | 515 | 2.19 | (NA | NA | NA) | 606 | 1.64 | 11 |
2PCC | - | - | - | - | - | - | - | (NA | NA | NA) | 4542 | 2.31 | 0 |
2QFW | 832 | 2.29 | 3 | 33 | 2.32 | - | - | 42 | 1.99 | 17 | 68 | 1.55 | 29 |
2SIC | 173 | 1.86 | 24 | 1077 | 2.28 | - | - | 17 | 1.85 | 61 | 12 | 2.04 | 9 |
2SNI | 17906 | 2.44 | 0 | - | - | - | - | 428 | 2.33 | 2 | - | - | - |
7CEI | 106 | 1.97 | 24 | 2290 | 1.9 | 366 | 1.07 | 705 | 1.57 | 7 | 6765 | 2.03 | 0 |
Summary c) | |||||||||||||
 |  | ZDOCK | CS | PatchDock (PD) | LZerD Rerank | LZerD | |||||||
Rank<100 | 11 | 7 | 3 | 11 | 14 | ||||||||
Rank<500 | 26 | 9 | 6 | 26 | 23 | ||||||||
Rank<1000 | 29 | 12 | 9 | 32 | 29 | ||||||||
Rank<2000 | 33 | 15 | 10 | 38 | 36 | ||||||||
Wins vs. LZerD Rerank | ZDOCK/LZerD Rerank 26/26 | CS/LZerD Rerank 5/34 | PD/LZerD Rerank 7/34 | - | - | ||||||||
Wins vs. LZerD | ZDOCK/LZerD 24/33 | CS/LZerD 5/34 | PD/LZerD 8/34 | LZerD Rerank/LZerD 24/28 | - |