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Figure 6 | BMC Bioinformatics

Figure 6

From: Comparison of phylogenetic trees through alignment of embedded evolutionary distances

Figure 6

Prediction of interaction specificity with gCEED. (a) The phylogenetic trees and binding specificity between two multigene families, GyrA/parC and GyrB/parE (redrawn from [28]). (b) A series of probability matrices that visualize the recursive prediction of individual interaction specificities. Each colored box/arrow indicates the indeterminate block that was chosen for further alignment via gCEED. (c) The final probability matrix with predicted mappings in black/grey. A perfect prediction (assuming no cross-interactions) would be expected to show black squares along the diagonal and white squares everywhere else in the matrix.

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