Figure 3From: A new permutation strategy of pathway-based approach for genome-wide association studyResults of general genome-wide association analysis and pathway analysis under scenario 2. A is quartile-quartile plot of general genome-wide association analysis. B is the q fdr value distributions of 166 pathways for the three permutation approaches. Times of 100,000 permutations were performed for SNP or gene randomization and 1,000 permutations for sample randomization.Back to article page