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Table 1 Number of reads in each data set.

From: WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads

Length 35 bp 40 bp 50 bp 60 bp 70 bp 100 bp 150 bp 200 bp 250 bp original
Reads 616 069 616 031 613 943 606 760 598 811 584 168 550 945 492 305 297 852 616 072
EGTs 886 7 836 29 999 48 472 62 112 92 000 119 674 130 544 89 979 172 461
Unique 886 7 827 29 923 48 218 61 687 90 854 116 743 125 624 85 565 164 444
Yield 0.14% 1.27% 4.87% 7.95% 10.30% 15.55% 21.19% 25.52% 28.73% 26.69%
  1. Number of reads and EGT yield for each data set. Some metagenomic reads have matches to more than one Pfam family and therefore are translated into more than one EGT. The column "Unique" denotes the total number of EGTs where EGTs from the same read are counted only once. The column "Yield" denotes the fraction of (unique) EGTs that could be obtained from the corresponding data set.