WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads

BMC Bioinformatics

Table 3 Rate of "Other" EGTs.

Read Length	Superkingdom	Phylum	Class	Order	Family	Genus	Species
35	0.0011	0.0671	0.1651	0.2816	0.4057	0.4554	0.6776
40	0.0011	0.0678	0.1691	0.2901	0.4388	0.5056	0.7340
50	0.0019	0.0667	0.1609	0.2954	0.4591	0.5292	0.7606
60	0.0024	0.0619	0.1552	0.2864	0.4637	0.5302	0.7663
70	0.0023	0.0617	0.1554	0.2954	0.4535	0.5221	0.7505
100	0.0035	0.0655	0.1539	0.2891	0.4456	0.4978	0.7172
150	0.0071	0.0692	0.1565	0.2964	0.4555	0.5006	0.6756
200	0.0100	0.0651	0.1467	0.2938	0.4500	0.4954	0.6658
250	0.0137	0.0542	0.1377	0.2849	0.4317	0.4693	0.6364

"Other" are EGT's with a relative abundance below the threshold 0.015 and are not shown in the histograms. Here we show the rates of "Other" EGTs relative to the total number of classified EGTs for each taxonomic rank and data set.

ISSN: 1471-2105