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Table 3 The Performance of SVM model (Learning Parameter: g: 0.01 c: 4 j: 1) Using PSI-BLAST Profile

From: Identification of ATP binding residues of a protein from its primary sequence

Threshold Sensitivity Specificity Accuracy MCC
-1 98.52 15.47 57 0.25
-0.9 97.93 20.43 59.18 0.29
-0.8 96.55 25.2 60.87 0.31
-0.7 95.07 30.68 62.88 0.34
-0.6 93.27 36.96 65.11 0.37
-0.5 90.87 43.59 67.23 0.39
-0.4 88.44 50.1 69.27 0.42
-0.3 85.48 56.34 70.91 0.44
-0.2 82 63.34 72.67 0.46
0 74.44 75.79 75.11 0.50
0.1 70.01 80.39 75.2 0.51
0.2 65.41 84.4 74.9 0.51
0.3 60.32 87.78 74.05 0.5
0.4 55.85 90.6 73.23 0.5
0.5 51.22 92.97 72.09 0.49
0.6 46.39 94.58 70.48 0.47
0.7 40.21 96.12 68.17 0.44
0.8 34.63 97.44 66.03 0.41
0.9 28.65 98.03 63.34 0.37
1 21.78 98.92 60.35 0.33
  1. (Italic-bold values indicate the point where sensitivity and specificity is roughly equal and Bold values indicate point where maximum Accuracy and MCC.)