Table 4 The cross-validated accuracy of dihedral prediction on CB513 dataset.
From: Prediction of backbone dihedral angles and protein secondary structure using support vector machines
CB513 | ||||||||
|---|---|---|---|---|---|---|---|---|
| Â | PSSM-only | SSE-1st run | SSE-2nd run | SSE-3rd run | ||||
NC | EM (%) | k-Means (%) | EM (%) | k-Means (%) | EM (%) | k-Means (%) | EM (%) | k-Means (%) |
2 | 81.4 | 81.7 | 81.8 | 82.1 | 83.2 | 83.4 | 81.8 | 83.5 |
3 | 79.3 | 79.6 | 79.7 | 79.8 | 81.2 | 81.1 | 79.6 | 81.2 |
4 | 78.7 | 74.5 | 79.0 | 74.4 | 80.5 | 76.1 | 79.0 | 75.8 |
5 | 65.0 | 63.8 | 65.2 | 64.1 | 66.9 | 65.3 | 65.2 | 65.0 |
6 | 63.7 | 59.2 | 63.8 | 59.3 | 65.5 | 60.4 | 63.7 | 60.1 |
7 | 56.5 | 54.6 | 56.8 | 54.7 | 58.3 | 56.0 | 56.8 | 55.4 |
8 | 53.8 | 53.7 | 54.0 | 53.8 | 55.4 | 55.1 | 53.9 | 54.6 |
9 | 53.8 | 51.1 | 54.0 | 51.0 | 55.3 | 52.3 | 54.0 | 51.7 |
10 | 52.9 | 50.2 | 53.1 | 50.3 | 54.5 | 51.6 | 53.0 | 51.0 |
11 | 50.3 | 48.5 | 50.6 | 48.5 | 51.8 | 49.7 | 50.6 | 49.1 |
12 | 47.0 | 41.2 | 47.2 | 41.5 | 48.4 | 42.3 | 47.2 | 42.1 |