Figure 4

Performance on Test Data. The performance of ReseqChip for the test dataset based on the number of sequencing errors and N-calls normalized to 100 nps is plotted for substitutions/deletions with haploid (left) and diploid (right) settings of GSEQ. The circles represent the performance of the optimal parameter constellations obtained from the training. The triangles represent the performance of running GSEQ for QT values of 3,6,9,12,18,24 (but without subsequent sequence assembly by ReseqChip). In the diploid settings only QT values of 3,6,9,12 are shown.