From: LipocalinPred: a SVM-based method for prediction of lipocalins
Feature | V* | Kernel | Parameters | SN (%) | SP (%) | Acc (%) | MCC | F measure | |||
---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | Threshold | C | γ | d |  |  |  |  |  |
AAC | A | R | -0.1 | 1 | 0.01 | - | 72.79 | 77.10 | 75.16 | 0.498 | 1.429 |
DPC | A | P | -0.1 | 0 | - | 2 | 80.14 | 87.34 | 84.10 | 0.678 | 1.658 |
PSSM | A | R | -0.1 | 5 | 9 | - | 89.70 | 89.15 | 89.40 | 0.786 | 1.725 |
 | D | R | -0.1 | 5 | 9 | - | 84.55 | 85.54 | 85.09 | 0.701 | 1.644 |
 | D | R | -0.1 | 5 | 9 | - | 88.96 | 84.33 | 86.42 | 0.731 | 1.633 |
SSC | A | R | -0.1 | 5 | 3 | - | 86.02 | 86.74 | 86.42 | 0.726 | 1.665 |
 | D | R | -0.1 | 5 | 3 | - | 84.55 | 86.74 | 85.75 | 0.712 | 1.664 |
 | D | R | -0.1 | 5 | 3 | - | 82.35 | 78.91 | 80.46 | 0.609 | 1.509 |
DPC+SSC | A | P | 0.1 | 0 | - | 2 | 85.29 | 86.14 | 85.76 | 0.713 | 1.651 |
PSSM+SSC | A | R | 0.0 | 4 | 1 | - | 88.97 | 92.16 | 90.72 | 0.812 | 1.785 |
 | A | R | -0.1 | 4 | 1 | - | 89.70 | 89.15 | 89.40 | 0.786 | 1.725 |
 | D | R | 0.0 | 4 | 1 | - | 87.49 | 80.72 | 83.77 | 0.678 | 1.561 |
 | D | R | 0.0 | 4 | 1 | - | 85.29 | 84.93 | 85.09 | 0.700 | 1.628 |
DPC+PSSM | A | R | -0.1 | 0 | 0.001 | - | 81.61 | 83.73 | 82.78 | 0.652 | 1.592 |
DPC+PSSM+SSC | A | P | 0.1 | 0 | - | 2 | 85.29 | 86.14 | 85.76 | 0.713 | 1.651 |