Table 1 SNP marker identification in trimmed assemblies
From: Next generation transcriptomes for next generation genomes using est2assembly
Dataset | Trimmed contigs | Total High Quality SNPs | Coding SNPs | Synonymous SNPs | Predicted with SEAN | Predicted with MIRA |
|---|---|---|---|---|---|---|
D. melanogaster (Sanger) | 24,629 | 77,969 | 49,341 | 15,535 | 8,060 | 415,501 |
B. anynana (Sanger) | 11,942 | 18,271 | 10,783 | 4,773 | 3,282 | 16,847 |
M. cinxia (GS20) | 12,492 | 5,622 | 3,521 | 1,979 | 5,918 | Not estimated |
M. sexta (Sanger + GSFLX) | 12,635 | 7,593 | 5,026 | 2,594 | 6,510 | 527,469 |
C. tremulae (GSFLX) | 9,771 | 3,238 | 2,087 | 978 | 2,905 | Not estimated |
E. aurinia (GSFLX) | 8,984 | 6,132 | 3,921 | 2,170 | 5,543 | Not estimated |
H. erato (Sanger + GSFLX) | 12,130 | 8,720 | 4,893 | 2660 | 8,744 | 22939 |
H. melpomene (Sanger + GSFLX) | 16,631 | 65,047 | 28,536 | 18,613 | 27,526 | 4,090,305 |
P. dardanus (GSFLX Titan.) | 25,083 | 49,421 | 20,694 | 11,069 | 7,061 | Not estimated |