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Figure 2 | BMC Bioinformatics

Figure 2

From: Integrative approaches to the prediction of protein functions based on the feature selection

Figure 2

Illustration of genomic data sources for the genes with 'Cation transport' function. 176 genes have the 'Cation transport' (GO:0006812) function. The relationship between these genes and the five different genomic data sources are illustrated. For each data source, the AUC value and the P20R value with the KLR method are also represented. (a) Protein domains belonging to the genes with the given GO term are coloured blue in the matrix. Domains appearing in the more than 10 genes are boxed in red in the matrix, and their names and identifiers are listed below. (b) Expression levels of genes with the given GO terms are presented. Genes and tissues are grouped based on the hierarchical bi-clustering of expression levels. Tissues commonly over-expressed in several genes are circled in blue and the names of tissues are listed below. (c) MGI phenotypes belonging to the genes with the given GO term are coloured blue in the matrix. Phenotypes appearing in the more than 15 genes are boxed in red in the matrix, and their names and identifiers are listed below. (d) Protein-protein interaction network of genes with the given GO term. Red (black) lines indicate the direct (indirect) interactions. Highly connected proteins based on direct interactions are listed with their identifiers. (e) OMIM disease is similarly presented its domains and phenotypes.

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