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Table 3 Impact of choice of gene set statistics on detecting gene set enrichment.

From: A general modular framework for gene set enrichment analysis

  mean maxmean median ES cond. FDR Wilcoxon
set 1 0.67 0.67 0.82 0.56 0.68 0.84
set 2 0.92 0.93 0.98 0.65 0.94 1.00
set 3 0.01 0.01 0.00 0.00 0.01 0.01
set 4 0.44 0.45 0.57 0.35 0.45 0.54
set 5 0.41 0.41 0.32 0.22 0.42 0.41
set 6 0.85 0.86 0.94 0.80 0.85 0.96
set 7 1.00 1.00 1.00 0.99 1.00 1.00
set 8 0.70 0.71 0.78 0.65 0.84 0.74
set 9 0.90 0.86 0.81 0.69 0.99 0.80
  1. The indicated values correspond to the proportion of p-values ≤ 0.05 for squared moderated t and resampling.