From: Assessing and selecting gene expression signals based upon the quality of the measured dynamics
a | |
---|---|
GDS599 | |
Rejected by LOOCV | Accepted by LOOCV |
actin polymerization or depolymerization | cellular carbohydrate metabolic process |
amino acid biosynthetic process | cellular alcohol metabolic process |
coenzyme biosynthetic process | response to external stimulus |
ER to Golgi vesicle-mediated transport | response to stress |
fat-soluble vitamin metabolic process | response to stimulus |
nucleobase, nucleoside, nucleotide and nucleic acid transport | generation of precursor metabolites and energy |
 | defense response |
 | inflammatory response |
 | response to wounding |
 | acute inflammatory response |
 | acute-phase response |
b | |
GDS253 | |
Rejected by LOOCV | Accepted by LOOCV |
blood vessel remodeling | acute-phase response |
cholesterol transport | alcohol biosynthetic process |
endothelial cell proliferation | coenzyme biosynthetic process |
keratinocyte differentiation | cofactor biosynthetic process |
positive regulation of epithelial cell proliferation | DNA damage response, signal transduction |
regulation of heart contraction | gluconeogenesis |
regulation of muscle contraction | hexose biosynthetic process |
response to hydrogen peroxide | monosaccharide biosynthetic process |
sterol transport | purine ribonucleotide biosynthetic process |
 | regulation of circadian rhythm |
 | ribonucleotide biosynthetic process |
 | translational initiation |
c | |
GDS972 | |
Rejected by LOOCV | Accepted by LOOCV |
ameboidal cell migration | activation of immune response |
base-excision repair | activation of plasma proteins during acute inflammatory response |
DNA-dependent DNA replication | aging |
ER to Golgi vesicle-mediated transport | alcohol catabolic process |
fatty acid beta-oxidation | ATP synthesis coupled electron transport |
fatty acid oxidation | B cell mediated immunity |
germ cell migration | bile acid metabolic process |
Golgi vesicle transport | carbohydrate catabolic process |
I-kappaB kinase/NF-kappaB cascade | cellular aromatic compound metabolic process |
modification-dependent macromolecule catabolic process | cellular carbohydrate catabolic process |
modification-dependent protein catabolic process | cofactor biosynthetic process |
proteasomal ubiquitin-dependent protein catabolic process | complement activation |
protein amino acid N-linked glycosylation | complement activation, classical pathway |
regulation of cellular biosynthetic process | DNA damage response, signal transduction |
regulation of DNA replication | DNA damage response, signal transduction by p53 class mediator |
regulation of protein import into nucleus | gas transport |
ubiquitin-dependent protein catabolic process | glucose catabolic process |
 | glutamine family amino acid catabolic process |
 | glycolysis |
 | heterocycle metabolic process |
 | hexose catabolic process |
 | humoral immune response mediated by circulating immunoglobulin |
 | immunoglobulin mediated immune response |
 | lipid biosynthetic process |
 | lymphocyte mediated immunity |
 | mitochondrial ATP synthesis coupled electron transport |
 | monosaccharide catabolic process |
 | oxidative phosphorylation |
 | protein targeting to mitochondrion |
 | response to toxin |
 | S-adenosylhomocysteine metabolic process |
 | steroid biosynthetic process |
 | sulfur compound biosynthetic process |