From: Assessing and selecting gene expression signals based upon the quality of the measured dynamics
a | |
---|---|
GDS599 | |
Rejected by LOOCV | Accepted by LOOCV |
actin polymerization or depolymerization | cellular carbohydrate metabolic process |
amino acid biosynthetic process | cellular alcohol metabolic process |
coenzyme biosynthetic process | response to external stimulus |
ER to Golgi vesicle-mediated transport | response to stress |
fat-soluble vitamin metabolic process | response to stimulus |
nucleobase, nucleoside, nucleotide and nucleic acid transport | generation of precursor metabolites and energy |
defense response | |
inflammatory response | |
response to wounding | |
acute inflammatory response | |
acute-phase response | |
b | |
GDS253 | |
Rejected by LOOCV | Accepted by LOOCV |
blood vessel remodeling | acute-phase response |
cholesterol transport | alcohol biosynthetic process |
endothelial cell proliferation | coenzyme biosynthetic process |
keratinocyte differentiation | cofactor biosynthetic process |
positive regulation of epithelial cell proliferation | DNA damage response, signal transduction |
regulation of heart contraction | gluconeogenesis |
regulation of muscle contraction | hexose biosynthetic process |
response to hydrogen peroxide | monosaccharide biosynthetic process |
sterol transport | purine ribonucleotide biosynthetic process |
regulation of circadian rhythm | |
ribonucleotide biosynthetic process | |
translational initiation | |
c | |
GDS972 | |
Rejected by LOOCV | Accepted by LOOCV |
ameboidal cell migration | activation of immune response |
base-excision repair | activation of plasma proteins during acute inflammatory response |
DNA-dependent DNA replication | aging |
ER to Golgi vesicle-mediated transport | alcohol catabolic process |
fatty acid beta-oxidation | ATP synthesis coupled electron transport |
fatty acid oxidation | B cell mediated immunity |
germ cell migration | bile acid metabolic process |
Golgi vesicle transport | carbohydrate catabolic process |
I-kappaB kinase/NF-kappaB cascade | cellular aromatic compound metabolic process |
modification-dependent macromolecule catabolic process | cellular carbohydrate catabolic process |
modification-dependent protein catabolic process | cofactor biosynthetic process |
proteasomal ubiquitin-dependent protein catabolic process | complement activation |
protein amino acid N-linked glycosylation | complement activation, classical pathway |
regulation of cellular biosynthetic process | DNA damage response, signal transduction |
regulation of DNA replication | DNA damage response, signal transduction by p53 class mediator |
regulation of protein import into nucleus | gas transport |
ubiquitin-dependent protein catabolic process | glucose catabolic process |
glutamine family amino acid catabolic process | |
glycolysis | |
heterocycle metabolic process | |
hexose catabolic process | |
humoral immune response mediated by circulating immunoglobulin | |
immunoglobulin mediated immune response | |
lipid biosynthetic process | |
lymphocyte mediated immunity | |
mitochondrial ATP synthesis coupled electron transport | |
monosaccharide catabolic process | |
oxidative phosphorylation | |
protein targeting to mitochondrion | |
response to toxin | |
S-adenosylhomocysteine metabolic process | |
steroid biosynthetic process | |
sulfur compound biosynthetic process |