BMC Bioinformatics

Table 1 Optimized parameter obtained for each genomic fragment length at each taxonomic rank

From: TACOA – Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach

	λ _opt
Fragment length	S	P	C	O	G
800 bp	500	300	100	25	100
1 Kbp	500	300	200	100	100
3 Kbp	500	300	300	500	400
10 Kbp	300	400	300	100	90
15 Kbp	400	300	500	200	100
50 Kbp	500	1000	400	500	80

Optimal lambda parameter (λ_opt) is shown for each genomic fragment length at each taxonomic rank: Superkingdom (S), Phylum (P), Class (C), Order (O), and Genus (G).

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com