Table 11 Comparison of reduced alphabets in terms of the ratio of exposed residues in the dataset by AA type Trans. = number of transitions between groups.
Amino Acid | Exposed ratio | DualRMI | WW5 | SR5 | MU4 | MM5 |
|---|---|---|---|---|---|---|
C | 12.8% | 1 | 1 | 1 | 1 | 1 |
I | 15.4% | 1 | 1 | 1 | 1 | 2 |
F | 15.9% | 1 | 1 | 1 | 2 | 2 |
L | 19.5% | 1 | 1 | 1 | 1 | 2 |
V | 20.3% | 1 | 1 | 1 | 1 | 2 |
W | 21.3% | 1 | 1 | 1 | 2 | 2 |
M | 23.2% | 1 | 1 | 1 | 1 | 2 |
Y | 25.6% | 1 | 1 | 1 | 2 | 2 |
A | 33.6% | 2 | 2 | 2 | 3 | 3 |
G | 43.5% | 3 | 3 | 3 | 3 | 3 |
H | 43.8% | 3 | 2 | 2 | 4 | 4 |
T | 47.1% | 3 | 2 | 2 | 3 | 5 |
S | 48.0% | 3 | 4 | 2 | 3 | 5 |
P | 55.1% | 4 | 3 | 4 | 3 | 5 |
N | 58.3% | 4 | 4 | 5 | 4 | 5 |
R | 61.3% | 4 | 4 | 2 | 4 | 5 |
Q | 62.5% | 4 | 4 | 2 | 4 | 5 |
D | 64.7% | 4 | 5 | 5 | 4 | 5 |
E | 73.1% | 5 | 5 | 2 | 4 | 5 |
K | 81.9% | 5 | 4 | 2 | 4 | 5 |
Trans. | -- | 4 | 8 | 8 | 9 | 4 |
Ave. range | -- | 7.0% | 16.0% | 9.4% | 19.9% | 11.0% |