TY - JOUR AU - Venkatachalam, C. M. PY - 1968 DA - 1968// TI - Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of 3 linked peptide units JO - Biopolymers VL - 6 UR - https://doi.org/10.1002/bip.1968.360061006 DO - 10.1002/bip.1968.360061006 ID - Venkatachalam1968 ER - TY - JOUR AU - Richardson, J. S. AU - Getzoff, E. D. AU - Richardson, D. C. PY - 1978 DA - 1978// TI - The beta bulge: a common small unit of nonrepetitive protein structure JO - Proc Natl Acad Sci USA VL - 75 UR - https://doi.org/10.1073/pnas.75.6.2574 DO - 10.1073/pnas.75.6.2574 ID - Richardson1978 ER - TY - JOUR AU - Milner-White, E. J. PY - 1987 DA - 1987// TI - Beta-bulges within loops as recurring features of protein structure JO - Biochim Biophys Acta VL - 911 UR - https://doi.org/10.1016/0167-4838(87)90017-3 DO - 10.1016/0167-4838(87)90017-3 ID - Milner-White1987 ER - TY - JOUR AU - Baker, E. N. AU - Hubbard, R. E. PY - 1984 DA - 1984// TI - Hydrogen bonding in globular proteins JO - Prog Biophys Mol Biol VL - 44 UR - https://doi.org/10.1016/0079-6107(84)90007-5 DO - 10.1016/0079-6107(84)90007-5 ID - Baker1984 ER - TY - CHAP AU - Schellmann, J. A. ED - Jaenicke, R. PY - 1980 DA - 1980// TI - The alphaL conformation at the ends of apha-helix BT - Protein Folding PB - Elsevier CY - Amsterdam ID - Schellmann1980 ER - TY - JOUR AU - Milner-White, E. J. PY - 1988 DA - 1988// TI - Recurring loop motif in proteins that occurs in right-handed and left-handed forms. Its relationship with alpha-helices and beta-bulge loops JO - J Mol Biol VL - 199 UR - https://doi.org/10.1016/0022-2836(88)90621-3 DO - 10.1016/0022-2836(88)90621-3 ID - Milner-White1988 ER - TY - JOUR AU - Eswar, N. AU - Ramakrishnan, C. PY - 1999 DA - 1999// TI - Secondary structures without backbone: an analysis of backbone mimicry by polar side chains in protein structures JO - Protein Eng VL - 12 UR - https://doi.org/10.1093/protein/12.6.447 DO - 10.1093/protein/12.6.447 ID - Eswar1999 ER - TY - JOUR AU - Duddy, W. J. AU - Nissink, J. W. M. AU - Allen, F. H. AU - Milner-White, E. J. PY - 2004 DA - 2004// TI - Mimicry by asx- and ST-turns of the four main types of beta-turn in proteins JO - Protein Science VL - 13 UR - https://doi.org/10.1110/ps.04920904 DO - 10.1110/ps.04920904 ID - Duddy2004 ER - TY - JOUR AU - Wan, W. -. Y. AU - Milner-White, E. J. PY - 1999 DA - 1999// TI - A Natural Grouping of Motifs with an Aspartate or Asparagine Residue Forming Two Hydrogen Bonds to Residues Ahead in Sequence: Their Occurrence at α-Helical N Termini and in Other Situations JO - Journal of Molecular Biology VL - 286 UR - https://doi.org/10.1006/jmbi.1999.2552 DO - 10.1006/jmbi.1999.2552 ID - Wan1999 ER - TY - JOUR AU - Wan, W. -. Y. AU - Milner-White, E. J. PY - 1999 DA - 1999// TI - A Recurring Two-Hydrogen-bond Motif Incorporating A Serine or Threonine Residue is found both at α-Helical N Termini and in Other Situations JO - Journal of Molecular Biology VL - 286 UR - https://doi.org/10.1006/jmbi.1999.2551 DO - 10.1006/jmbi.1999.2551 ID - Wan1999 ER - TY - JOUR AU - Ballesteros, J. A. AU - Deupi, X. AU - Olivella, M. AU - Haaksma, E. E. AU - Pardo, L. PY - 2000 DA - 2000// TI - Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation JO - Biophys J VL - 79 UR - https://doi.org/10.1016/S0006-3495(00)76514-3 DO - 10.1016/S0006-3495(00)76514-3 ID - Ballesteros2000 ER - TY - JOUR AU - Watson, J. D. AU - Milner-White, E. J. PY - 2002 DA - 2002// TI - A Novel Main-chain Anion-binding Site in Proteins: The Nest. A Particular Combination of Π,Ψ Values in Successive Residues Gives Rise to Anion-binding Sites That Occur Commonly And Are Found Often at Functionally Important Regions JO - Journal of Molecular Biology VL - 315 UR - https://doi.org/10.1006/jmbi.2001.5227 DO - 10.1006/jmbi.2001.5227 ID - Watson2002 ER - TY - JOUR AU - Torrance, G. M. AU - Leader, D. P. AU - Gilbert, D. R. AU - Milner-White, E. J. PY - 2009 DA - 2009// TI - A novel main chain motif in proteins bridged by cationic groups: the niche JO - J Mol Biol VL - 385 UR - https://doi.org/10.1016/j.jmb.2008.11.007 DO - 10.1016/j.jmb.2008.11.007 ID - Torrance2009 ER - TY - JOUR AU - Hayward, S. PY - 2001 DA - 2001// TI - Peptide-plane flipping in proteins JO - Protein Sci VL - 10 UR - https://doi.org/10.1110/ps.23101 DO - 10.1110/ps.23101 ID - Hayward2001 ER - TY - STD TI - Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H, Dimitropoulos D, Fillon J, Hussain A, Ionides JM, et al.: E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 2004, (32 Database):D211–216. 10.1093/nar/gkh078 ID - ref15 ER - TY - JOUR AU - Prlic, A. AU - Down, T. A. AU - Hubbard, T. J. PY - 2005 DA - 2005// TI - Adding Some SPICE to DAS JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti1106 DO - 10.1093/bioinformatics/bti1106 ID - Prlic2005 ER - TY - JOUR AU - Lovell, S. C. AU - Davis, I. W. AU - Arendall, W. B. AU - de Bakker, P. I. AU - Word, J. M. AU - Prisant, M. G. AU - Richardson, J. S. AU - Richardson, D. C. PY - 2003 DA - 2003// TI - Structure validation by Cα geometry: ϕ, φ and Cβ deviation JO - Proteins VL - 50 UR - https://doi.org/10.1002/prot.10286 DO - 10.1002/prot.10286 ID - Lovell2003 ER - TY - JOUR AU - McDonald, I. K. AU - Thornton, J. M. PY - 1994 DA - 1994// TI - Satisfying hydrogen bonding potential in proteins JO - J Mol Biol VL - 238 UR - https://doi.org/10.1006/jmbi.1994.1334 DO - 10.1006/jmbi.1994.1334 ID - McDonald1994 ER - TY - JOUR AU - Kabsch, W. AU - Sander, C. PY - 1983 DA - 1983// TI - Dictionary of Protein Secondary Structure: Pattern Recognition of Hydrogen-Bonded and Geometrical Features JO - Biopolymers VL - 2 UR - https://doi.org/10.1002/bip.360221211 DO - 10.1002/bip.360221211 ID - Kabsch1983 ER - TY - JOUR AU - Dunbrack, R. L. AU - Karplus, M. PY - 1993 DA - 1993// TI - Backbone-dependent rotamer library for proteins. Application to side-chain prediction JO - J Mol Biol VL - 230 UR - https://doi.org/10.1006/jmbi.1993.1170 DO - 10.1006/jmbi.1993.1170 ID - Dunbrack1993 ER - TY - STD TI - Porter CT, Bartlett GJ, Thornton JM: The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res 2004, (32 Database):D129–133. 10.1093/nar/gkh028 ID - ref21 ER - TY - JOUR AU - Herráez, A. PY - 2006 DA - 2006// TI - Biomolecules in the computer: Jmol to the rescue JO - Biochemistry and Molecular Biology Education VL - 34 UR - https://doi.org/10.1002/bmb.2006.494034042644 DO - 10.1002/bmb.2006.494034042644 ID - Herráez2006 ER - TY - STD TI - Lincoln D. Stein/GD[http://search.cpan.org/dist/GD/] UR - http://search.cpan.org/dist/GD/ ID - ref23 ER - TY - JOUR AU - Laskowski, R. A. AU - Chistyakov, V. V. AU - Thornton, J. M. PY - 2005 DA - 2005// TI - PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. JO - Nucleic Acids Res VL - 33 Database ID - Laskowski2005 ER - TY - JOUR AU - Orengo, C. A. AU - Michie, A. D. AU - Jones, S. AU - Jones, D. T. AU - Swindells, M. B. AU - Thornton, J. M. PY - 1997 DA - 1997// TI - CATH – a hierarchic classification of protein domain structures JO - Structure VL - 5 UR - https://doi.org/10.1016/S0969-2126(97)00260-8 DO - 10.1016/S0969-2126(97)00260-8 ID - Orengo1997 ER -