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Table 3 Call rate and genotyping error for two SNPs in mixed quality

From: Genotype determination for polymorphisms in linkage disequilibrium

   call rate (%) error rate (%)
r 2   0.802 0.500 0.304 0.802 0.500 0.304
M1 SNP1 99.75 99.75 99.74 0.05 0.05 0.05
  SNP2 97.96 97.98 97.97 0.54 0.54 0.53
M2 SNP1 99.87 99.75 99.74 0.06 0.05 0.05
  SNP2 98.89 98.02 97.97 0.63 0.56 0.53
M3 SNP1 99.87 99.82 99.79 0.04 0.05 0.05
  SNP2 98.81 98.37 98.19 0.30 0.43 0.49
  1. SNP1 was in high quality and SNP2 was in low quality.