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Table 4 Comparison of M2 and our method M3 on the estimation of r2

From: Genotype determination for polymorphisms in linkage disequilibrium

  r 2 0.802 0.500 0.304
high quality M2 .798 (4e-5) .497 (3e-5) .302 (2e-5)
  M3 .799 (3e-5) .498 (2e-5) .303 (1e-5)
low quality M2 .757 (.002) .469 (.001) .283 (6e-4)
  M3 .770 (.001) .478 (6e-4) .291 (3e-4)
mixed quality M2 .775 (8e-4) .482 (4e-4) .293 (2e-4)
  M3 .784 (4e-4) .488 (2e-4) .297 (1e-4)
  1. The first row shows true values of the square of Pearson's correlation. Numbers in parentheses are mean square errors.