Table 4 Comparison of M2 and our method M3 on the estimation of r2
From: Genotype determination for polymorphisms in linkage disequilibrium
| Â | r 2 | 0.802 | 0.500 | 0.304 |
|---|---|---|---|---|
high quality | M2 | .798 (4e-5) | .497 (3e-5) | .302 (2e-5) |
| Â | M3 | .799 (3e-5) | .498 (2e-5) | .303 (1e-5) |
low quality | M2 | .757 (.002) | .469 (.001) | .283 (6e-4) |
| Â | M3 | .770 (.001) | .478 (6e-4) | .291 (3e-4) |
mixed quality | M2 | .775 (8e-4) | .482 (4e-4) | .293 (2e-4) |
| Â | M3 | .784 (4e-4) | .488 (2e-4) | .297 (1e-4) |