Quantitative measures for the management and comparison of annotated genomes

BMC Bioinformatics

Table 4 Most complex alternatively spliced annotations.

Organism	Gene	SO Class	Transcript Count	Splice Complexity
C. elegans	unc-43 – UNCoordinated family member	2:0:23	25	101 (0.311)
D. melanogaster	Dscam – Down syndrome cell adhesion molecule	0:0:59	60	149 (0.084)
A. gambiae	GPRGR9	0:0:9	10	34 (0.762)
M. musculus	LOC628147 similar to zinc finger protein 709	17:2:24	44	707 (0.747)
H. sapiens	CREM – cAMP responsive element modulator	0:0:20	21	53 (0.253)

Columns: organism, gene name, SO classification code (see Figure 4 for key), number of transcripts, Splice Complexity (Splice Complexity per transcript-pair in parenthesis).

ISSN: 1471-2105