From: QSRA – a quality-value guided de novo short read assembler
Organism | Error rate (%) | Depth | Program | Program version | Program release date | Maximum RAM used (GB) | Run time (s) | Genome covered (%) | Largest contig (bp) | N50 (bp) | N80 (bp) | Number of Contigs | Runtime options |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
pina | 5.33 | 479 | SSAKE | 3.2 | 2008 | 0.91 | 3463 | 79.8 | 3051 | 241 | N/A | 24686 | -m 16 |
pina | 5.33 | 479 | VCAKE | 1.0 | 05/2007 | 0.74 | 8400 | 68.1 | 1721 | 101 | N/A | 188778 | -k 33 -o 34 |
pina | 5.33 | 479 | VELVET | 0.6.04 | 03/2008 | 0.36 | 74 | 58.5 | 3076 | 285 | N/A | 464 | -min_contig_lgth 34 |
pina | 5.33 | 479 | EDENA | 2.1.1 | 2008 | 0.24 | 210 | 77.8 | 3329 | 400 | N/A | 3377 | -c 34 |
pina | 5.33 | 479 | QSRA | 06032008 | 06/2008 | 0.84 | 1553 | 93.1 | 1046 | 94 | 86 | 32473 | -k 33 -o 34 |
pina | 5.33 | 479 | QSRA* | 06032008 | 06/2008 | 0.91 | 1301 | 99.3 | 1771 | 85 | 85 | 83004 | -k 33 -o 34 |
gera03 | 5.18 | 376 | SSAKE | 3.2 | 2008 | 0.78 | 1936 | 85.1 | 3613 | 347 | 42 | 18093 | -m 16 |
gera03 | 5.18 | 376 | VCAKE | 1.0 | 05/2007 | 0.64 | 3114 | 82.6 | 1964 | 157 | 96 | 175451 | -k 33 -o 34 |
gera03 | 5.18 | 376 | VELVET | 0.6.04 | 03/2008 | 0.32 | 55 | 60.2 | 4296 | 386 | N/A | 311 | -min_contig_lgth 34 |
gera03 | 5.18 | 376 | EDENA | 2.1.1 | 2008 | 0.16 | 98 | 88.9 | 3285 | 535 | 41 | 1977 | -c 34 |
gera03 | 5.18 | 376 | QSRA | 06032008 | 06/2008 | 0.69 | 733 | 99.1 | 3012 | 71 | 71 | 21132 | -k 33 -o 34 |
gera03 | 5.18 | 376 | QSRA* | 06032008 | 06/2008 | 0.75 | 641 | 99.0 | 3012 | 569 | 167 | 60584 | -k 33 -o 34 |
suisp | 2.26 | 49 | SSAKE | 3.2 | 2008 | 2.21 | 5941 | 95.8 | 6475 | 1036 | 355 | 15632 | -m 16 |
suisp | 2.26 | 49 | VCAKE | 1.0 | 05/2007 | 1.66 | 7202 | 99.0 | 11894 | 1577 | 718 | 487006 | -k 36, -o 37 |
suisp | 2.26 | 49 | VELVET | 0.6.04 | 03/2008 | 0.74 | 144 | 96.4 | 18690 | 4401 | 1992 | 1185 | -min_contig_lgth 37 |
suisp | 2.26 | 49 | EDENA | 2.1.1 | 2008 | 0.48 | 357 | 97.3 | 8829 | 1836 | 759 | 3254 | -c 37 |
suisp | 2.26 | 49 | QSRA | 06032008 | 06/2008 | 1.89 | 3329 | 96.9 | 11934 | 2432 | 259 | 18834 | -k 36 -o 37 |
suisp | 2.26 | 49 | QSRA* | 06032008 | 06/2008 | 2.18 | 3628 | 98.5 | 11934 | 2370 | 259 | 168464 | -k 36 -o 37 |