From: Disease candidate gene identification and prioritization using protein interaction networks
Rank | Integrative functional annotation based ranking (using ToppGene) | PPIN-based ranking (K-Step Markov) | PPIN-based ranking (Hits with Priors) | PPIN-based ranking (PageRank with Priors) |
---|---|---|---|---|
1 | TGFBR2*# | MYL7* | MYL7* | MYL7* |
2 | EGFR* | PEX19 | PEX19 | PEX19 |
3 | SMAD4* | NPHP1 | NPHP1 | NPHP1 |
4 | SRF*# | HDAC1* | MAGED1 | MAGED1 |
5 | FOS | MAGED1 | BMP2* | BMP2* |
6 | ACVR1B | BMP2* | HDAC1* | HDAC1* |
7 | SMAD2* | SRF*# | IGBP1 | IGBP1 |
8 | ERBB2*# | IGBP1 | MID2 | MID2 |
9 | NOTCH2*# | GRB2* | SMAD3* | SMAD3* |
10 | FN1* | SMAD3* | SRF*# | SRF*# |
11 | BMPR2*# | EP300*# | GRB2* | GRB2* |
12 | NID2 | MID2 | MYC* | MYC* |
13 | SMAD1* | MYC* | HIPK2 | HIPK2 |
14 | SMAD3* | SMAD2* | FGF2* | FGF2* |
15 | INSR*# | CREBBP*# | SMAD2* | SMAD2* |
16 | HIPK1 | SMAD1* | SMAD1* | SMAD1* |
17 | RRAS | HIPK2 | HDAC3 | HDAC3 |
18 | RASA1* | TGFB1* | EP300*# | EP300*# |
19 | MEF2C* | FGF2* | CREBBP*# | CREBBP*# |
20 | RAC1* | AR* | TGFB1* | TGFB1* |