BMC Bioinformatics

Table 4 Results of RF analysis on TGEN data: Top 11 ranked SNPs, and single SNP association analysis.

From: Performance of random forest when SNPs are in linkage disequilibrium

Dataset 1
		RF0:IM0	RF0:IM1	RF1:IM0	RF1:IM1	GENO	ALLELIC
rs2927477	50005555	+	-	-	-	0.4483	0.4122
rs4803759	50019299	+	+	+	+	0.0833	0.0242
rs4605275	50030333	+	+	+	+	0.0962	0.0291
rs8104483	50064194	+	+	+	+	0.6459	0.4007
rs4803767	50064799	+	+	+	+	0.6459	0.4007
rs10119	50098513	+	+	-	-	0.0028	0.0055
rs4420638	50114786	+	+	+	+	2.651E-12	7.73E-12
rs5158	50139018	+	+	+	-	0.3015	0.8121
rs3760627	50149020	-	-	-	-	0.6852	0.5458
rs16979595	50169221	-	-	-	-	0.9526	0.8689
rs7257916	50174724	-	-	-	-	0.6859	0.5471
rs10424046	50227876	+	+	+	+	0.0106	0.0038
rs1560725	50235627	+	+	+	+	0.0507	0.0466
rs11083758	50238901	-	-	+	+	0.0474	0.0134
rs3786507	50240095	+	+	+	+	0.0374	0.0396
rs2889490	50242247	-	-	-	+	0.0252	0.0094
rs10416445	50248502	-	-	+	+	0.0187	0.0065
Dataset 2
		RF0:IM0	RF0:IM1	RF1:IM0	RF1:IM1	GENO	ALLELIC
rs2927477	50005555	+	-	-	-	0.4483	0.4122
rs4803759	50019299	+	+	+	+	0.0833	0.0242
rs4605275	50030333	+	+	+	+	0.0962	0.0291
rs8104483	50064194	+	+	+	+	0.6459	0.4007
rs4803767	50064799	+	+	+	+	0.6459	0.4007
rs10119	50098513	NA	NA	NA	NA	0.0028	0.0055
rs4420638	50114786	+	+	+	+	2.651E-12	7.73E-12
rs5158	50139018	+	+	+	-	0.3015	0.8121
rs3760627	50149020	-	+	-	-	0.6852	0.5458
rs16979595	50169221	+	-	-	-	0.9526	0.8689
rs7257916	50174724	-	+	-	-	0.6859	0.5471
rs10424046	50227876	+	+	+	+	0.0106	0.0038
rs1560725	50235627	+	+	+	+	0.0507	0.0466
rs11083758	50238901	-	-	+	+	0.0474	0.0134
rs3786507	50240095	+	+	+	+	0.0374	0.0396
rs2889490	50242247	-	-	-	+	0.0252	0.0094
rs10416445	50248502	-	-	+	+	0.0187	0.0065

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ISSN: 1471-2105

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