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Table 1 Description of the samples analyzed by Decon2LS for this study

From: Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

Sample Name

Species

Instrument Description

Sample Description

ShewFed028_LTQFT_1_29May05_Andro_0505-02

Shewenella oneidensis MR-1

Thermo Fisher LTQ-FT linear ion trap-FTICR hybrid mass spectrometer with electrospray ionization (ESI)

A chemostatic growth experiment in oxygen-limited condition with the addition of fumarate (an electron-acceptor)

Caulo_084_run3_03Nov06_Andro_06-06-12

Caulobacter crescentus

11.5-Tesla FTICR instrument, designed and constructed in our laboratory at PNNL [23]

Insoluble preparation of cells that were carbon-limited (glucose limitation) as part of a time course study

EIF_NAF_CF_Cys1_21Oct06_OWL_06-08-02

Homo sapiens

Thermo Fisher LTQ-Orbitrap hybrid mass spectrometer with electrospray ionization (ESI)

Samples from human nipple aspirate fluid collected as part of bilateral studies of possible ductal carcinoma in breast tissue

  1. Three samples generated from three different species and run on three different high resolution instruments were used to assess the results produced by Decon2LS. These datasets will be available for download at http://omics.pnl.gov.