Figure 4
From: TCP: a tool for designing chimera proteins based on the tertiary structure information
The screenshots of the web interface. The parameter setup screen (A) and the resultant colour-coded structures (B). At first, a PDB file and a DSSP file (option) are uploaded to the server. TCP parses the PDB file and the DSSP file, and displays the parameter setup menu (A). A user selects the target chain, the target region (TR), etc., and submits the parameters. TCP analyzes the TR and displays the result in the web-browser (B). The upper part shows the colour-coded 3D structures and the primary sequences. By using the web interface, four figures of the TR divided by the combination of the three CSs and each CS can be seen at once. The lower part shows the centroids and the normal vectors defining the CSs, and the numbers of residues in each part. The set of the CSs can be changed by the pull-down menu. In this example, the target is 1EVT:A and the threshold of the ASA is 0 Å2.