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Table 1 Performance results. Runtime in seconds for the transcriptome data set with approximately 40 billion bases. p indicates the number of processors. The last column is the total runtime of all phases, not including file input.

From: Parallel short sequence assembly of transcriptomes

P

Read Data

Construct Graph

Compact Graph

Reduce Graph

Total

64

516.47

73.06

81.17

256.8

411.03

128

364.20

40.70

43.17

107.68

191.55

256

189.94

22.63

24.17

59.27

106.07

512

195.04

13.37

15.42

33.23

62.02

1024

168.26

8.08

11.64

20.13

39.85