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Table 5 Relative speedup comparison.

From: Short read DNA fragment anchoring algorithm

Speedup

EMBF

EMBF-3#

SW

BLAT

SOAP

EMBF

1

1/1.57

48838

42.66

1/3.1

EMBF-3#

 

1

76734

67.02

1/1.97

SW

  

1

1/1145

1/151385

BLAT

   

1

1/132.3

SOAP

    

1

  1. The value indicates the speedup when comparing row algorithm with column algorithm. A value n > 1 means that the row algorithm performs n times fast than column algorithm. All data were collected from average performance of 10 K anchor requests.
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BMC Bioinformatics

ISSN: 1471-2105

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