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Table 2 Coefficient estimates of selected informative genes for p = 55 and n = 100. The mean and the standard deviation (SD) of the coefficient estimates for selected informative genes were calculated from 100 runs.

From: Network-based support vector machine for classification of microarray samples

  

L1

New (w = 1)

New (w = d MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaaOaaaeaacqWGKbazaSqabaaaaa@2D41@ )

New (w = d)

Scenario

β

Mean

SD

Mean

SD

Mean

SD

Mean

SD

1

β1 = 5

0.53

0.29

0.04

0.04

0.27

0.26

0.67

0.35

 

β 1 ( 1 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabigdaXiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35C9@

0.11

0.17

0.14

0.15

0.10

0.10

0.07

0.08

 

β2 = -5

-0.55

0.30

-0.04

0.05

-0.28

0.32

-0.68

0.35

 

β 1 ( 2 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabikdaYiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeyOeI0IaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@36B8@

-0.08

0.15

-0.18

0.15

-0.11

0.09

-0.08

0.08

2

β1 = 5

0.76

0.33

0.09

0.06

0.34

0.16

0.91

0.40

 

β 1 ( 1 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabigdaXiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35C9@

0.09

0.14

0.20

0.14

0.14

0.11

0.09

0.08

 

β2 = 3

0.29

0.23

0.01

0.03

0.15

0.10

0.48

0.23

 

β 1 ( 2 ) = 3 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabikdaYiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeG4mamdabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35C7@

0.08

0.12

0.11

0.13

0.07

0.08

0.04

0.04

3

β1 = 5

0.51

0.39

0.03

0.07

0.41

0.70

0.95

0.34

 

β 1 ( 1 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabigdaXiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35C9@

0.22

0.21

0.24

0.19

0.20

0.17

0.13

0.11

 

β 8 ( 1 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabiIda4aqaaiabcIcaOiabigdaXiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeyOeI0IaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@36C4@

-0.01

0.07

-0.01

0.11

-0.03

0.21

-0.04

0.12

 

β2 = 3

0.26

0.27

0.01

0.04

0.15

0.30

0.52

0.27

 

β 1 ( 2 ) = 3 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabikdaYiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeG4mamdabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35C7@

0.09

0.13

0.13

0.16

0.12

0.16

0.07

0.11

 

β 8 ( 2 ) = 3 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabiIda4aqaaiabcIcaOiabikdaYiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeyOeI0IaeG4mamdabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@36C2@

0.001

0.07

0.004

0.06

0.01

0.05

-0.01

0.07

4

β1 = 5

0.40

0.38

0.03

0.06

0.48

0.80

0.97

0.43

 

β 1 ( 1 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabigdaXiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35C9@

0.27

0.26

0.32

0.25

0.30

0.23

0.20

0.20

 

β 7 ( 1 ) = 5 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabiEda3aqaaiabcIcaOiabigdaXiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeyOeI0IaeGynaudabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@36C2@

-0.04

0.12

-0.02

0.14

-0.11

0.24

-0.09

0.16

 

β2 = -3

-0.23

0.29

-0.004

0.01

-0.21

0.45

-0.56

0.30

 

β 1 ( 2 ) = 3 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabigdaXaqaaiabcIcaOiabikdaYiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeyOeI0IaeG4mamdabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@36B4@

-0.15

0.20

-0.16

0.19

-0.17

0.19

-0.09

0.13

 

β 7 ( 2 ) = 3 10 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqOSdi2aa0baaSqaaiabiEda3aqaaiabcIcaOiabikdaYiabcMcaPaaakiabg2da9KqbaoaalaaabaGaeG4mamdabaWaaOaaaeaacqaIXaqmcqaIWaamaeqaaaaaaaa@35D3@

0.03

0.08

-0.002

0.10

0.05

0.18

0.06

0.15