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PY - 2003 DA - 2003// TI - CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg1039 DO - 10.1093/bioinformatics/btg1039 ID - Sharan2003 ER - TY - JOUR AU - Gupta, M. AU - Liu, J. S. PY - 2005 DA - 2005// TI - De novo cis-regulatory module elicitation for eukaryotic genomes JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0408743102 DO - 10.1073/pnas.0408743102 ID - Gupta2005 ER - TY - JOUR AU - Frith, M. C. AU - Fu, Y. AU - Yu, L. AU - Chen, J. F. AU - Hansen, U. AU - Weng, Z. PY - 2004 DA - 2004// TI - Detection of functional DNA motifs via statistical over-representation JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh299 DO - 10.1093/nar/gkh299 ID - Frith2004 ER - TY - JOUR AU - Van Loo, P. AU - Aerts, S. AU - Thienpont, B. AU - De Moor, B. AU - Moreau, Y. AU - Marynen, P. PY - 2008 DA - 2008// TI - ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues? JO - Genome Biol VL - 9 UR - https://doi.org/10.1186/gb-2008-9-4-r66 DO - 10.1186/gb-2008-9-4-r66 ID - Van Loo2008 ER - TY - JOUR AU - Matys, V. AU - Kel-Margoulis, O. V. AU - Fricke, E. AU - Liebich, I. AU - Land, S. AU - Barre-Dirrie, A. PY - 2006 DA - 2006// TI - TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj143 DO - 10.1093/nar/gkj143 ID - Matys2006 ER - TY - JOUR AU - Hertzberg, L. AU - Zuk, O. AU - Getz, G. AU - Domany, E. PY - 2005 DA - 2005// TI - Finding motifs in promoter regions JO - J Comput Biol VL - 12 UR - https://doi.org/10.1089/cmb.2005.12.314 DO - 10.1089/cmb.2005.12.314 ID - Hertzberg2005 ER - TY - CHAP AU - Zaki, M. J. AU - Hsiao, C. ED - Grossman, R. ED - Han, J. 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PY - 2001 DA - 2001// TI - Significance analysis of microarrays applied to the ionizing radiation response JO - Proc Natl Acad Sci U S A VL - 98 UR - https://doi.org/10.1073/pnas.091062498 DO - 10.1073/pnas.091062498 ID - Tusher2001 ER - TY - JOUR AU - Kent, W. J. AU - Sugnet, C. W. AU - Furey, T. S. AU - Roskin, K. M. AU - Pringle, T. H. AU - Zahler, A. M. PY - 2002 DA - 2002// TI - The human genome browser at UCSC JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.229102. Article published online before print in May 2002 DO - 10.1101/gr.229102. Article published online before print in May 2002 ID - Kent2002 ER - TY - JOUR AU - Aerts, S. AU - Van Loo, P. AU - Thijs, G. AU - Mayer, H. AU - de Martin, R. AU - Moreau, Y. PY - 2005 DA - 2005// TI - TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki354 DO - 10.1093/nar/gki354 ID - Aerts2005 ER - TY - JOUR AU - Coessens, B. 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