From: HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models
Measure
Calculation
Sensitivity (Sn)
S n = T P T P + F N MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaem4uamLaemOBa4Maeyypa0ZaaSGaaeaacqWGubavcqWGqbauaeaacqWGubavcqWGqbaucqGHRaWkcqWGgbGrcqWGobGtaaaaaa@3751@
Specificity (Sp)
S p = T N T N + F P MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaem4uamLaemiCaaNaeyypa0ZaaSGaaeaacqWGubavcqWGobGtaeaacqWGubavcqWGobGtcqGHRaWkcqWGgbGrcqWGqbauaaaaaa@3751@
False Discovery Rate (FDR)
F D R = F P T P + F P MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemOrayKaemiraqKaemOuaiLaeyypa0ZaaSGaaeaacqWGgbGrcqWGqbauaeaacqWGubavcqWGqbaucqGHRaWkcqWGgbGrcqWGqbauaaaaaa@37F8@
Matthew's Correlation Coefficient (MCC)
M C C = ( T P ⋅ T N − F P ⋅ F N ) / ( ( T P + F P ) ⋅ ( T P + F N ) ⋅ ( T N + F P ) ⋅ ( T N + F N ) ) MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemyta0Kaem4qamKaem4qamKaeyypa0ZaaeWaaeaacqWGubavcqWGqbaucqGHflY1cqWGubavcqWGobGtcqGHsislcqWGgbGrcqWGqbaucqGHflY1cqWGgbGrcqWGobGtaiaawIcacaGLPaaacqGGVaWldaqadaqaamaakaaabaGaeiikaGIaemivaqLaemiuaaLaey4kaSIaemOrayKaemiuaaLaeiykaKIaeyyXICTaeiikaGIaemivaqLaemiuaaLaey4kaSIaemOrayKaemOta4KaeiykaKIaeyyXICTaeiikaGIaemivaqLaemOta4Kaey4kaSIaemOrayKaemiuaaLaeiykaKIaeyyXICTaeiikaGIaemivaqLaemOta4Kaey4kaSIaemOrayKaemOta4KaeiykaKcaleqaaaGccaGLOaGaayzkaaaaaa@6660@