From: Fine-grained parallel RNAalifold algorithm for RNA secondary structure prediction on FPGA
Sequence Size (M = 20) | N = 154 | N = 387 | N = 1556 | N = 2981 | ||||
---|---|---|---|---|---|---|---|---|
Time | Speedup | Time | Speedup | Time | Speedup | Time | Speedup | |
FPGA(16-PE) | 0.05 | 8.4 | 0.19 | 8.7 | 5.1 | 9.8 | 16.4 | 12.2 |
Pentium(1) | 0.42 | 1 | 1.65 | 1 | 49.5 | 1 | 199.8 | 1 |
Xeon(2) | 0.38 | 1.1 | 1.38 | 1.2 | 45.1 | 1.1 | 178.5 | 1.1 |
Athlon(3) | 0.31 | 1.4 | 1.18 | 1.4 | 37.8 | 1.3 | 141.6 | 1.4 |