Table 1 The topologies of the secondary structures with lower contact energy than that of the native topology: Stage 1, with the assumption of knowing the backbone Cα atom positions.
PDB | NAA | PctN | N α | Nb | Nm | Neff | Pcteff |
|---|---|---|---|---|---|---|---|
1BW6 | 56 | 58.93% | 4 | 0 | 384 | 9 | 2.34% |
1DV5 | 80 | 46.25% | 3 | 0 | 48 | 2 | 4.17% |
1HDJ | 77 | 48.05% | 4 | 0 | 384 | 1 | 0.26% |
1K6U | 58 | 44.83% | 2 | 2 | 64 | 13 | 20.31% |
1RZL | 91 | 56.04% | 4 | 0 | 384 | 4 | 1.04% |
1YRI | 35 | 71.43% | 3 | 0 | 48 | 5 | 10.42% |
1FK5 | 93 | 53.76% | 4 | 0 | 384 | 3 | 0.78% |
1G6X | 58 | 44.83% | 2 | 2 | 64 | 4 | 6.25% |
1I2T | 61 | 88.52% | 4 | 0 | 384 | 2 | 0.52% |
1WPA | 107 | 85.98% | 3 | 0 | 48 | 4 | 8.33% |
2NLS | 36 | 47.22% | 1 | 3 | 96 | 27 | 28.12% |
1B0X | 72 | 61.11% | 5 | 0 | 3840 | 167 | 4.35% |
1KDX | 81 | 66.67% | 5 | 0 | 3840 | 6 | 0.16% |
1NFO | 131 | 83.97% | 5 | 0 | 3840 | 2 | 0.05% |
1NKL | 78 | 65.38% | 5 | 0 | 3840 | 2 | 0.05% |
1UNK | 87 | 55.17% | 5 | 0 | 3840 | 7 | 0.18% |
1A0B | 117 | 78.63% | 6 | 0 | 46080 | 9 | 0.02% |
1EIJ | 72 | 68.06% | 4 | 2 | 3072 | 27 | 0.88% |
1F1F | 88 | 64.77% | 6 | 0 | 46080 | 39 | 0.08% |
1FIO | 190 | 88.95% | 6 | 0 | 46080 | 2 | 0.00% |
1ZVA | 75 | 88.00% | 2 | 0 | 8 | 0 | 0.00% |
1TQG | 105 | 86.67% | 4 | 0 | 384 | 0 | 0.00% |
2CC6 | 64 | 71.88% | 1 | 3 | 96 | 1 | 1.04% |
2END | 137 | 42.34% | 3 | 0 | 48 | 5 | 10.42% |
2G7O | 68 | 80.88% | 4 | 0 | 384 | 5 | 1.30% |
1NKD | 59 | 86.44% | 2 | 0 | 8 | 0 | 0.00% |
2MHR | 118 | 60.17% | 5 | 0 | 3840 | 13 | 0.34% |
1NGR | 85 | 56.47% | 6 | 0 | 46080 | 102 | 0.22% |
1USM | 77 | 61.04% | 2 | 4 | 3072 | 28 | 0.91% |
2OVG | 58 | 67.24% | 3 | 3 | 2304 | 19 | 0.82% |