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Table 4 Prediction performance (%) of ISORT, PLPD and proposed method

From: A method to improve protein subcellular localization prediction by integrating various biological data sources

 

ISORT

PLPD

Proposed method

Measure-I (k = 3) (%)

72.89

85.32

85.25

Measure-II (%)

53.84

59.26

64.36

   Mitochondrion

32.1862

0.81

53.4413

   Vacuole

17.8295

20.83

16.2791

   Spindle pole

12.069

42.31

51.7241

   Cell periphery

22.6415

21.25

28.3019

   Punctate composite

1.626

15.66

13.8211

   Vacuolar membrane

0

36.36

18.5185

   ER

32.3529

1.04

45.2206

   Nuclear periphery

20.339

5.41

42.3729

   Endosome

25.5814

34.29

34.8837

   Bud neck

26.6667

19.15

48.3333

   Microtubule

25

52.94

30

   Golgi

17.5

32.14

40

   Late Golgi

11.1111

33.33

25

   Peroxisome

25

33.33

65

   Actin

17.2414

25

58.6207

   Nucleolus

22.293

11.4

56.051

   Cytoplasm

64.5305

99.85

77.7919

   ER to Golgi

50

80

66.6667

   Early Golgi

27.451

32.43

41.1765

   Lipid particle

15.7895

30.77

5.2632

   Nucleus

81.6204

65.28

79.6699

   Bud

39.1304

70.59

21.7391

Measure-III (%)

26.7254

34.74

41.8125