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Table 4 Prediction performance (%) of ISORT, PLPD and proposed method

From: A method to improve protein subcellular localization prediction by integrating various biological data sources

  ISORT PLPD Proposed method
Measure-I (k = 3) (%) 72.89 85.32 85.25
Measure-II (%) 53.84 59.26 64.36
   Mitochondrion 32.1862 0.81 53.4413
   Vacuole 17.8295 20.83 16.2791
   Spindle pole 12.069 42.31 51.7241
   Cell periphery 22.6415 21.25 28.3019
   Punctate composite 1.626 15.66 13.8211
   Vacuolar membrane 0 36.36 18.5185
   ER 32.3529 1.04 45.2206
   Nuclear periphery 20.339 5.41 42.3729
   Endosome 25.5814 34.29 34.8837
   Bud neck 26.6667 19.15 48.3333
   Microtubule 25 52.94 30
   Golgi 17.5 32.14 40
   Late Golgi 11.1111 33.33 25
   Peroxisome 25 33.33 65
   Actin 17.2414 25 58.6207
   Nucleolus 22.293 11.4 56.051
   Cytoplasm 64.5305 99.85 77.7919
   ER to Golgi 50 80 66.6667
   Early Golgi 27.451 32.43 41.1765
   Lipid particle 15.7895 30.77 5.2632
   Nucleus 81.6204 65.28 79.6699
   Bud 39.1304 70.59 21.7391
Measure-III (%) 26.7254 34.74 41.8125