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Figure 5 | BMC Bioinformatics

Figure 5

From: A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism

Figure 5

The RMSF with respect to amino acid residues of the SARS CoVMpro. The values were calculated averaging at time range 500–2000 ps of MD simulation. The values of the SARS CoVMpro complexed with octapeptide P3Lys, P3Arg and P3Ile were shown in A, B and C, respectively. The value of the SARS CoVMpro free form was shown in D. The shadow region from left to right represent the region of protein chain namely one turn α-helix (residues 47–54) and long loop (residues 184–192) of SARS CoVMpro, respectively.

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BMC Bioinformatics

ISSN: 1471-2105

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