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Table 3 Accuracy comparison between our composite distance method and other methods

From: ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets

Data sets Number of species GCD (%) OG (%) CCV (k <= 5) (%) CCV(k = 5) (%) SDD (%) Composite Distance (%)
Dataset1 52 86.44 83.93 87.82 88.29 NA 90.29
Dataset2 53 86.40 85.49 86.27 87.92 NA 90.74
Dataset3 82 92.58 84.35 95.97 91.54 NA 98.46
Dataset4 398 86.56 85.52 79.03 78.86 NA 90.07
Dataset5 181 89.74 80.34 87.19 87.19 NA 98.30
Dataset6 96 85.45 87.22 99.00 99.07 NA 99.26
Dataset7 277 84.04 81.89 83.28 83.19 NA 90.71
Dataset8 165 77.98 87.87 85.20 82.78 NA 94.38
Dataset9 54 87.34 88.27 91.39 91.47 81.57 96.55
  1. GCD = gene content distance, OG = overlapping gene distance, SDD = structural domain distance.