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Table 3 Accuracy comparison between our composite distance method and other methods

From: ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets

Data sets

Number of species

GCD (%)

OG (%)

CCV (k <= 5) (%)

CCV(k = 5) (%)

SDD (%)

Composite Distance (%)

Dataset1

52

86.44

83.93

87.82

88.29

NA

90.29

Dataset2

53

86.40

85.49

86.27

87.92

NA

90.74

Dataset3

82

92.58

84.35

95.97

91.54

NA

98.46

Dataset4

398

86.56

85.52

79.03

78.86

NA

90.07

Dataset5

181

89.74

80.34

87.19

87.19

NA

98.30

Dataset6

96

85.45

87.22

99.00

99.07

NA

99.26

Dataset7

277

84.04

81.89

83.28

83.19

NA

90.71

Dataset8

165

77.98

87.87

85.20

82.78

NA

94.38

Dataset9

54

87.34

88.27

91.39

91.47

81.57

96.55

  1. GCD = gene content distance, OG = overlapping gene distance, SDD = structural domain distance.