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Table 1 CoSets of E. coli core model.

From: Analysis on relationship between extreme pathways and correlated reaction sets

CoSet ID

CoSet Size

Reactions

1

4

ACKr, ACt2r, EX_ac(e), PTAr

2

3

G6PDH2r, GND, PGL

3

3

EX_for(e), FORt, PFL

4

3

D_LACt2, EX_lac_D(e), LDH_D

5

3

CYTBD, EX_o2(e), O2t

6

3

ADHEr, ETOHt2r, EX_etoh(e)

7

2

TALA, TKT1

8

2

ICL, MALS

9

2

GAPD, PGK

10

2

FUM, SUCD4

11

2

FBA, TPI

12

2

EX_pyr(e), PYRt2r

13

2

EX_h2o(e), H2Ot

14

2

EX_glc(e), GLCpts

15

2

ENO, PGM

16

2

CO2t, EX_co2(e)

17

2

AKGt2r, EX_akg(e)

18

2

AKGDH, SUCOAS

19

2

ADK1, PPS

20

2

ACONT, CS

  1. This table lists all CoSets of E. coli core model. We give each CoSet an ID and list it in the First column. We list CoSet size and reactions it contained in the second and third column. Reaction names are in abbreviated form. The abbreviation list is in table 7 and additional file 1.
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BMC Bioinformatics

ISSN: 1471-2105

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