BMC Bioinformatics

Table 2 The functional subsystems (SS) and their related genes of E. coli _iAF1260

From: Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach

SS	TLM	CPGB	VLIM	CEB	LBR
genes	b0003	b0004, b0025, b0029	b0071	b0085	b0096
	b0004	b0052, b0103, b0109	b0072	b0086	b0179
	b0031	b0131, b0133, b0134	b0073	b0087	b0181
	b0166	b0142, b0154, b0159	b0074	b0088	b0182
	b2472	b0173, b0174, b0369	b3770	b0090	b0524
	b2478	b0414, b0415, b0417	b3771	b0091	b0914
	b2838	b0420, b0421, b0423	b3774	b0954	b0915
	b3359	b0475, b0750, b0907		b1093	b0918
	b3433	b1096, b1208, b1210		b1094	b1094
	b3809	b1277, b1662, b1740		b1288	b1215
	s0001	b1812, b2103, b2153		b2323	b3198
		b2315, b2320, b2400		b3176	b3633
		b2515, b2530, b2564		b3189
		b2574, b2615, b2746		b3729
		b2747, b2763, b2764		b3730
		b2927, b3041, b3058		b3967
		b3177, b3187, b3360		b3972
		b3368, b3634, b3639
		b3804, b3805, b3850
		b3974, b3990, b3991
		b3992, b3993, b3994
		b3997, b4039, b4040
		b4407, s0001
SS	MM	APM	GM	MLM	PPB
genes	b0159	b0159	b0175	b0185	b0522, b0523
	b2687	b0386	b2585	b1092	b0945, b1062
	b2942	b2818	b3018	b1094	b1131, b1281
	b3939	b3172	b4041	b2316	b2312, b2476
	b4013	b3957	b4160	b2323	b2499, b2507
	s0001	b3958		b3255	b2557, b2780
		b3959		b3256	b3642, b4005
		b3960			b4006, b4177
		s0001			b4244, b4245
SS	NSP	CAC	GSM	TTPM	TIM
genes	b0639	b0720	b0907	b0908, b1260	b0914
	b1098	b1136		b1261, b1262	s0001
	b2827			b1263, b1264
	b3648			b1693, b2329
	s0001			b2599, b2600
				b3389
SS	AAM	FM	ACM	HM	CM
genes	b0928	b1415	b1415	b2019, b2020	b2750, b2751
		b3941	b3608	b2021, b2022	b2752, b2762
				b2023, b2024	b2763, b2764
				b2025, b2026	b3607
SS	IITM	OP	U
genes	b3040	b3731, b3732	s0001
	b3196	b3733, b3734
	s0001	b3735, b3736
		b3737, b3738

* genes (text in bold) are important but not essential genes

Back to article page

ISSN: 1471-2105

Contact us

General enquiries: journalsubmissions@springernature.com