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Table 2 Gentrepid ab initio results

From: Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies

Predictions

Reference list

ER

L95%

U95%

S

L95%

U95%

CPS rank 8+ pathways

HS

3.3

1.1

9.4

0.45

0.21

0.72

CPS rank 8+ pathways

HS – annotated

7.2

2.1

25

1.00

0.57

1.00

CPS rank 8+ pathways

MHWD

2.1

1.3

3.6

0.30

0.20

0.42

CPS rank 8+ pathways

MHWD – annotated

6.8

3.6

13

0.95

0.75

0.99

CPS interactions top 50%

HS

4.1

1.2

15

0.27

0.10

0.57

CPS interactions top 50%

HS – annotated

9.0

2.2

37

0.60

0.23

0.88

CPS interactions top 50%

MHWD

1.7

0.79

3.8

0.11

0.06

0.22

CPS interactions top 50%

MHWD – annotated

8.1

3.2

20

0.54

0.29

0.77

CMP top 10%

HS

2.2

0.3

17

0.1

0.02

0.38

CMP top 10%

MHWD

2.0

0.8

4.8

0.1

0.08

0.18

  1. Abbreviations in Table: ER – Enrichment Ratio, L95% – Lower 95% confidence limit, U95% – Upper 95% confidence limit, S – Sensitivity