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Table 2 Gentrepid ab initio results

From: Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies

Predictions Reference list ER L95% U95% S L95% U95%
CPS rank 8+ pathways HS 3.3 1.1 9.4 0.45 0.21 0.72
CPS rank 8+ pathways HS – annotated 7.2 2.1 25 1.00 0.57 1.00
CPS rank 8+ pathways MHWD 2.1 1.3 3.6 0.30 0.20 0.42
CPS rank 8+ pathways MHWD – annotated 6.8 3.6 13 0.95 0.75 0.99
CPS interactions top 50% HS 4.1 1.2 15 0.27 0.10 0.57
CPS interactions top 50% HS – annotated 9.0 2.2 37 0.60 0.23 0.88
CPS interactions top 50% MHWD 1.7 0.79 3.8 0.11 0.06 0.22
CPS interactions top 50% MHWD – annotated 8.1 3.2 20 0.54 0.29 0.77
CMP top 10% HS 2.2 0.3 17 0.1 0.02 0.38
CMP top 10% MHWD 2.0 0.8 4.8 0.1 0.08 0.18
  1. Abbreviations in Table: ER – Enrichment Ratio, L95% – Lower 95% confidence limit, U95% – Upper 95% confidence limit, S – Sensitivity