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Table 1 The comparison of the four methods

From: CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data

 

Datasets

Hap-Block

MLR

STAMPA

CGTS

Number of tagSNPs

5q31

17

8

8

8

 

ENm013

15

12

12

12

 

ENr112

33

20

20

20

 

ENr113

~

22

22

22

Prediction accuracy

5q31

0.887

0.912

0.909

0.922

 

ENm013

0.757

0.932

0.901

0.941

 

ENr112

0.819

0.947

0.911

0.949

 

ENr113

~

0.963

0.913

0.972

Run time(s)

5q31

19100

18

122

14

 

ENm013

9207

121

85

117

 

ENr112

4405

303

108

156

 

ENr113

~

394

133

239