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Table 1 Resource files used in this work. This table describes the resource files which contain the orthology information used in this work. For each resource, the name of the files used, their size and version is displayed. These files contain the data that has been integrated in OGO. The file structure of each resource is different. For instance, Homologene has only one file, whereas Inparanoid has 595. Hence, different processing mechanisms are needed for each resource.

From: OGO: an ontological approach for integrating knowledge about orthology

Resource

File

Size (in KB)

Version

KOG

kyva=gb.txt

2098

06/06/2003

KOG

kog.txt

1312

21/07/2003

Inparanoid

595 files in tables_stats directory

1153434

22/04/2008

OrthoMCL

all_orthomcl.out

8631

20/07/2006

OrthoMCL

BAE_geneid_anno.txt

40913

20/07/2006

Homologene

homologene.data

10846

28/07/2008