Table 1 Francisella data sets combined in RDF with load times (elapsed time) into a Sesame Native repository with index structure [SPOC, POSC, POSC].

Genome data sources and annotations

Integrated Microbial Genome Data

francisella.rdf2.nt

10,434

2.37 min

Fn genome data from The integrated microbial genomes (IMG) system

http://genome.jgi-psf.org/mic_home.html

Francisella NCBI RefSeq Data

NC_008601.nt

12,781

0.69 min

Fn annotation data from Refseq Database

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=118496615

KEGG genome annotation

Pathway*.nt

113,700

3.97 min

Fn genome annotation from KEGG downloaded from PathCase

http://nashua.case.edu/PathwaysKegg/Web/

Superfamily Annotation

francisellaSUPERFAMILY.nt

16,110

0.27 min

Fn data from SUPERFAMILY Database

http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/gen_list.cgi?genome=0b

Proteomics Data

Proteomics Experimental Data

Membranes.nt

416,086

10.43 min

University of Washington MglA protein abundance data sets from biological samples

Membranes Fraction

Proteomics Experimental Data

WholeCell.nt

184,221

8.36 min

University of Washington MglA protein abundance data sets from biological samples

WholeCell Fraction

Proteomics Experimental Data

Soluble.nt

580,873

4.33 min

University of Washington MglA protein abundance data sets from biological samples

Soluble Fraction

Francisella (novicida U112) Proteome

248,647

4.79 min

University of Washington Fn peptide data

Francisella(novicida U112) Proteome

interact-prot.nt

20,682

0.6 min

University of Washington Fn protein identification data

Francisella (novicida U112) genome

FnU112Version3.nt

56,754

1.4 min

University of Washington Fn genome data

Proteome Identifier mapping to Genome

Mgla_search_db.fasta.blastp4_ypURL.nt

1,719

0.03 min

Proteomics Identifier mapping to Genome from BLAST comparison

GO genome annotation

Ft_novicida_U112_go.nt

135,345

2.2 min

Fn genome annotation from Gene Ontology Database

Transcriptomic Data

Transcriptomics Experimental Data

GSE5468_family.soft_2.SERIES._rdf

45

0.01 min

GEO Ac GSE5468 MglA transcript abundance data set SERIES data

Transcriptomics Experimental Data

GSE5468_family.soft_2.Platform._rdf

33,797

0.53

GEO Ac GSE5468 MglA transcript abundance data set PLATFORM data

Transcriptomics Experimental Data

GSE5468_family.soft_2.SAMPLE._rdf

223,539

12.5 min

GEO Ac GSE5468 MglA transcript abundance data set SAMPLE data

Transcriptomics Experimental Data

GSE5468_arrays_metadata.txt.nt

170

0.03 min

GEO Ac GSE5468 MglA transcript abundance data set SAMPLE metadata

Transcriptomics Experimental Data

FTN2FTSA.nt

3,626

0.27 min

Blast Mapping of SchuS4 locus tag to U112 locus tag