Table 6 Superfamily Annotation Query. SeRQL select query identifies PSNs, NCBi Protein identifiers and Superfamily annotations from SUPERFAMILY database, where MglA peptide abundance is greater than 2000. SUPERFAMILY database annotations are linked to the PSN identifiers in the MglA data through the FTN identifiers which are linked to the NCBI Protein identifiers. The path expression is displayed in bold and shown graphically in Figure 8.
SELECT psn, pid, family |
|---|
FROM |
{psn} rdfs:seeAlso {ftn}, |
{pid} gen:locus tag {ftn}, |
{pid} prot:Protein Family {family}, |
{analysis} wu:poson {psn}, |
{analysis} mgla:experiment {exp}, |
{exp} mgla:abundance {abundance} |
WHERE abundance > 2000 |
AND family LIKE "http://supfam.org/SUPERFAMILY/cgi-bin/model.cgi?model=*" |
USING NAMESPACE gen = <http://img.jgi.doe.gov/schema#>, |
prot = <http://purl.uniprot.org/core/>, |
mgla = <https://wwamirce.gs.washington.edu/fnu112/experiments/mgla/schema#>, |
wu = <https://wwamirce.gs.washington.edu/fnu112/schema#> |