Threshold selection in gene co-expression networks using spectral graph theory techniques

BMC Bioinformatics

Table 3 Comparison with known co-expressed yeast genes

Cluster and paraclique overlap
Cluster (from [14])	Number of genes in cluster (abbreviated-from heat map figures)	Number of paracliques with cluster overlap	Total paraclique overlap
CLN2	58	2	25
Y'	27	2	19
Histone	9	1	8
MET	20	0	0
CLB2	36	1	10
MCM	38	0	0
SIC1	27	0	0

A list of clusters of genes found to be co-expressed over the yeast cell cycle in [14], along with the number of paracliques found to contain those genes in this study and the total number of cluster genes found in all paracliques. Comparisons were performed on an abbreviated set of cluster genes specified in the heatmap figures from [14].

ISSN: 1471-2105