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Table 6 Comparison between computational data and literature data

From: Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes

GeneName

Computational data

Literature data

ADCY8

HOXF, ETSF, SORY

CREB

ADCY9

ZF5F, SP1F, ZBPF, MAZF, EKLF, EGRF, EBOX, CDEF, WHNF, AHRR, ETSF, HESF

c-Myc/EBOX

AKAP1

MYOD, EKLF, MAZF, EGRF, ETSF, HOXF, AP1R, EBOX

c-Myc/EBOX

AKAP8

SP1F, EKLF, ZBPF, EBOX, ZF5F, HIFF, MAZF, EGRF, ETSF, AHRR, CREB

CREB

AKAP9

ZBPF, EGRF, EKLF, ETSF, HOXF, SP1F, MAZF, GLIF, HOMF, NKXH, CREB

c-Myc/EBOX

AKAP10

ETSF, SP1F, HESF, EBOX, ZBPF, MAZF, MYBL, MYOD, AP4R, EGRF, CREB, MZF1

c-Myc/EBOX

AKAP12

EBOX, EGRF, SORY

c-Myc/EBOX, SRF/SRFF

CREB1

SORY, SP1F, NFKB, ETSF, ZBPF, MYOD, EKLF, AP4R, MZF1, HICF

Myc/EBOX, Sp1/SP1F, NFkB/NFKB

CREM

ZBPF, EGRF, SP1F, MAZF, EKLF, ETSF, CREB, WHNF, HESF, EBOX, MYBL, HIFF, AHRR

CREB

PDE4B

ETSF, SORY, HOXF, ZBPF, HEAT, CREB

CREB

PDE4C

ZBPF, ETSF, CREB, GLIF, MAZF

Myc/EBOX, CREB

PDE4D

SORY, HOXF, NKXH, ETSF, CREB, GATA, MYOD

CREB

PRKACA

EKLF, ZBPF, EGRF, MZF1, NKXH, ETSF, MAZF, SORY, HOXF

USF1/EBOX, USF2/EBOX

PRKAR1A

ETSF, CREB, ZBPF, EBOX, EGRF, SORY, GATA, MYBL, MYOD, HIFF, SP1F, HESF

AP1/AP1F, AP2/AP2F, Sp1/SP1F, CREB, FOXC2, FOXD, FOXD2

PRKAR1B

EKLF, MAZF, HESF, PLAG, ZBPF, EBOX, EGRF, MYOD, MZF1, AHRR, ETSF, HIFF, SP1F, AP1F

Jun/AP1F, p53/P53F, Oct-1/OCT1, Egr1/EGRF Pax1/PAX1

PRKAR2B

ZBPF, ZF5F, EGRF, EKLF, MAZF, HESF, SP1F, CREB, EBOX, ETSF, NF1F

Sp1/SP1F, NF-1/NF1F, Myc/EBOX, CEBPbeta/CEBP USF1, USF2/EBOX

  1. The table shows the transcriptional factor families identified by computational analysis and the transcriptional factors/transcriptional family identified by analysis of literature data. The factors identified by both analysis are shown in bold.