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Table 6 Comparison between computational data and literature data

From: Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes

GeneName Computational data Literature data
ADCY8 HOXF, ETSF, SORY CREB
ADCY9 ZF5F, SP1F, ZBPF, MAZF, EKLF, EGRF, EBOX, CDEF, WHNF, AHRR, ETSF, HESF c-Myc/EBOX
AKAP1 MYOD, EKLF, MAZF, EGRF, ETSF, HOXF, AP1R, EBOX c-Myc/EBOX
AKAP8 SP1F, EKLF, ZBPF, EBOX, ZF5F, HIFF, MAZF, EGRF, ETSF, AHRR, CREB CREB
AKAP9 ZBPF, EGRF, EKLF, ETSF, HOXF, SP1F, MAZF, GLIF, HOMF, NKXH, CREB c-Myc/EBOX
AKAP10 ETSF, SP1F, HESF, EBOX, ZBPF, MAZF, MYBL, MYOD, AP4R, EGRF, CREB, MZF1 c-Myc/EBOX
AKAP12 EBOX, EGRF, SORY c-Myc/EBOX, SRF/SRFF
CREB1 SORY, SP1F, NFKB, ETSF, ZBPF, MYOD, EKLF, AP4R, MZF1, HICF Myc/EBOX, Sp1/SP1F, NFkB/NFKB
CREM ZBPF, EGRF, SP1F, MAZF, EKLF, ETSF, CREB, WHNF, HESF, EBOX, MYBL, HIFF, AHRR CREB
PDE4B ETSF, SORY, HOXF, ZBPF, HEAT, CREB CREB
PDE4C ZBPF, ETSF, CREB, GLIF, MAZF Myc/EBOX, CREB
PDE4D SORY, HOXF, NKXH, ETSF, CREB, GATA, MYOD CREB
PRKACA EKLF, ZBPF, EGRF, MZF1, NKXH, ETSF, MAZF, SORY, HOXF USF1/EBOX, USF2/EBOX
PRKAR1A ETSF, CREB, ZBPF, EBOX, EGRF, SORY, GATA, MYBL, MYOD, HIFF, SP1F, HESF AP1/AP1F, AP2/AP2F, Sp1/SP1F, CREB, FOXC2, FOXD, FOXD2
PRKAR1B EKLF, MAZF, HESF, PLAG, ZBPF, EBOX, EGRF, MYOD, MZF1, AHRR, ETSF, HIFF, SP1F, AP1F Jun/AP1F, p53/P53F, Oct-1/OCT1, Egr1/EGRF Pax1/PAX1
PRKAR2B ZBPF, ZF5F, EGRF, EKLF, MAZF, HESF, SP1F, CREB, EBOX, ETSF, NF1F Sp1/SP1F, NF-1/NF1F, Myc/EBOX, CEBPbeta/CEBP USF1, USF2/EBOX
  1. The table shows the transcriptional factor families identified by computational analysis and the transcriptional factors/transcriptional family identified by analysis of literature data. The factors identified by both analysis are shown in bold.